Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca06g01302 ATGATGCCCCAACGAGTTAATCTGCACATAGCCTTAACATTCTTACAACTTTGTTATGCAGGAAATCATATATTTGTGAGAATTGCACTTGATACAGGTGTAAGCAAGCTTATATTTCCTGTCTATAGAAACATTACTGCCTTGATTCTCCTCGCTCCCCTCTCATATTTTTCAGAGAAGAAAGACAGGCCATCAATAACTGCTTATTGTATACTACACTTTTTCCTACTTGGACTTGTTGGAATAACAATGAAAGAAGGATTCTACCTATTGGGTTTGGAGAACACATCACCTACCTTTGCTTCTGCTATGCAGAATTCTGTTCCGGCCCTCACCTTTCTGATGGCTGCACTACTAAGATATGAGAGCGTGCATTTCAATAGGATTGATGGGGTGGCTAAGGTCCTTGGAGTCCTTGCTTCTGTTGGAGGTGCTTCGATCATTACCCTTTACAAGGGACCTGCTATTTATACTCCACGTTTAGCATTACATCATCATGAACAATACTTGTCTATATTGGGGGATGCCACGGGAAAGAACTGGAACATGGGTGGCATCTATCTCTTTGGTCACTGCTTATGTTGGTCTAGTTGGATTGTGATGCAAGCATTCGTTCTGAAAATATACTCGGCCCCACTCACAGTTTCTGCATTTACGTGCTTCTTTGGTGTTGTGCAGTTTTTGACAGTTGCAGCCTTTTTTGAGAAGGATTCCAAAGCCTGGCAGGTCAATTCTAGTGGAGAGATCTACAGTGTTTTGTTCTCGGGACTGGTGACTTCAGGGCTGGCATCAGCAATACAGATATGGACTATTGGCAAGGGAGGGCCAGTGCTTGCTTCAATTTATCTACCTTTACAAACATTACTTGTAGCTTTGATGGCATCTATTGTTTTTGGTGAAGAATTCTTCTTGGGAGGGATTATTGGAGCATTCTTAATTATATCTGGACTATACCTTGTTGTCTGGGGAAGAAGTCAAGAAACCAAGTTTGACAAACAGCTGTTCCTCAGTGTCTGCTTTACAAGCGTTCTGCCAACTTTTGCAATGGAAGCAGAGTTGGATACCGAGCAGCAGCAGATGATGGATGGAAGTTATTCCCAAACTATGCGAATTGATCCGAAAAGGGCTCGATTTCCATGCTCTGTTGTGTGGTCACCACTTCCTGTGATCTCGTGGTTCATTCCTTGCATTGGTCATATTGGAATCTGCAGAGAGGATGGAGTGATATTGGATTTTGCAGGGCCTAATTTTGTGTGTGTGGACAATTTTGCGTTTGGATCTGCCACTCGCTATCTTCAAATTCCCAAAGAAAAGTGTTGCATCCCTTTAGGCCAGTCTGCGTACAATGGTGAGGAGCACTACATGCAGGGTGAAACTAGAGATGACTTGAGGACTTGGGATGATGGACTAAGGAAGAGCACTCAAGAATTTCAACATCGATCTTACAATCTCTTTACCTGCAACTGCCACTCGTTTGTTGCCAATAATTTAAACAGGTTGGGTTTCCTGTCTGGTGGATGGAATGTGGTGAACCTTGCAATTTTCATTTTATTCAATGGACGTTGGGTCAGCAAAGCATCTATGCTTCGATCTATCTTGCCATTTGTGGTTGTATTTTTTCTTGGAGTCACATTTGGGGGCTTCACTTTCCTAAAGTTTTGGTTCTTCTTCATTGTCATTCTTATTGGGTGGTTCCTTCTTGAGGGACAAGTCATTAGCTGCCACTCCGTCGAGGCATGGACTGATCATCTCCAAAAGGGCAACGAATCCAAAAAACTCATTGTTGTGGATTTTACTGCTTCTTGGTGCGGACCATGCCGTTTCATTTCACCATTTCTGTCTGAGTTGGCTAAGAAGTTTACAAATGTCATATTTTTAAAGGTGGATGTGGATGAATTGAAGACTGTTGCTGAAGATTTTGCTGTTGAGGCTATGCCCACTTTTGTGTTTGTGAAAGAAGGAACGCTTCTTGGCAAAGTGGTGGGAGCAAAGAAGGAAGAACTGCAGCAGACAATAGAGAAGCATGCGGCTTCATCTAGTGCTTAA 2046 0.4267 MMPQRVNLHIALTFLQLCYAGNHIFVRIALDTGVSKLIFPVYRNITALILLAPLSYFSEKKDRPSITAYCILHFFLLGLVGITMKEGFYLLGLENTSPTFASAMQNSVPALTFLMAALLRYESVHFNRIDGVAKVLGVLASVGGASIITLYKGPAIYTPRLALHHHEQYLSILGDATGKNWNMGGIYLFGHCLCWSSWIVMQAFVLKIYSAPLTVSAFTCFFGVVQFLTVAAFFEKDSKAWQVNSSGEIYSVLFSGLVTSGLASAIQIWTIGKGGPVLASIYLPLQTLLVALMASIVFGEEFFLGGIIGAFLIISGLYLVVWGRSQETKFDKQLFLSVCFTSVLPTFAMEAELDTEQQQMMDGSYSQTMRIDPKRARFPCSVVWSPLPVISWFIPCIGHIGICREDGVILDFAGPNFVCVDNFAFGSATRYLQIPKEKCCIPLGQSAYNGEEHYMQGETRDDLRTWDDGLRKSTQEFQHRSYNLFTCNCHSFVANNLNRLGFLSGGWNVVNLAIFILFNGRWVSKASMLRSILPFVVVFFLGVTFGGFTFLKFWFFFIVILIGWFLLEGQVISCHSVEAWTDHLQKGNESKKLIVVDFTASWCGPCRFISPFLSELAKKFTNVIFLKVDVDELKTVAEDFAVEAMPTFVFVKEGTLLGKVVGAKKEELQQTIEKHAASSSA 681
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca06g01302 681 PANTHER WAT1-RELATED PROTEIN 5 333 IPR030184 GO:0016021|GO:0022857
Cca06g01302 681 Pfam Protein of unknown function (DUF778) 387 436 IPR008496 -
Cca06g01302 681 Pfam Protein of unknown function (DUF778) 438 522 IPR008496 -
Cca06g01302 681 Pfam EamA-like transporter family 183 321 IPR000620 GO:0016020|GO:0016021
Cca06g01302 681 Pfam EamA-like transporter family 17 132 IPR000620 GO:0016020|GO:0016021
Cca06g01302 681 PRINTS Thioredoxin family signature 594 602 - -
Cca06g01302 681 PRINTS Thioredoxin family signature 602 611 - -
Cca06g01302 681 PRINTS Thioredoxin family signature 641 652 - -
Cca06g01302 681 ProSiteProfiles Thioredoxin domain profile. 566 677 IPR013766 -
Cca06g01302 681 Pfam Thioredoxin 575 674 IPR013766 -
Cca06g01302 681 ProSitePatterns Thioredoxin family active site. 595 613 IPR017937 -
Cca06g01302 681 Gene3D Glutaredoxin 566 680 - -
Cca06g01302 681 SUPERFAMILY Multidrug resistance efflux transporter EmrE 230 325 - -
Cca06g01302 681 SUPERFAMILY Thioredoxin-like 568 678 IPR036249 -
Cca06g01302 681 CDD TRX_family 582 673 - -
Cca06g01302 681 PANTHER WAT1-RELATED PROTEIN 5 333 - -
Cca06g01302 681 SUPERFAMILY Multidrug resistance efflux transporter EmrE 42 137 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca06g01302 Cca-Chr6 27760539 27780815 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca06g01302 2 330 Nodulin-like Gene Family AT1G75500 59.581 4.93e-141 416
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca06g01302 - - gmx:100790386 586.645