Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca06g01294 atgggtcgtggaaaaattgagataaagttgattgagaaccccaccaacaggcaagtcacctactccaagcgaaggaatggtatcttcaagaaagctcatgaactcagtgttctctgtgatgctaaggtttcactcatcatgttctccaAAAACAACAAGATGCATGAATACATTAGCCCTGGCCTTACGACAAAAAAGATCATTGATCAGTATCAGAAGACTTTGGGGGATATCGATCTGTGGCGCTCTCACTATGAGAAAATGCTTGAAAACTTGAAGAAGCTGAAAGATATTAACAACAAACTGAGGAGACAGATCAGGCATAGGATTGGTGAGGGTTTGGATTTGGACGACCTGAGCTTCCAGCAACTGCGAACTCTTGAAGAGGATATGGTTGCTTCCATAGGCAAAATACGCGAAAGAAAGTTCCACGTGATCAAAACTCGGACTGATACCTGTAAGAAAAAGGTTAAAAGCTTGGAGCAAATGAATGGGAATCTCCTGCTTGAACTTAAGGAAAAGTGTGTGATCCATCCACAATTTATTTTGCACGATGAAGGAGACGAGGAATCAGCAGTTGCACTGGCCAACGGCGCCTCCACCTTGTATGCATTCTGTCAGCACCATACTCATCTGAATCTTCCCCACCATGCAGAAGCACTTCCACAACAACAACAACCCTTCAAAACTCACGATCTGCGCCTTGCTTGA 711 0.3474 MGRGKIEIKLIENPTNRQVTYSKRRNGIFKKAHELSVLCDAKVSLIMFSKNNKMHEYISPGLTTKKIIDQYQKTLGDIDLWRSHYEKMLENLKKLKDINNKLRRQIRHRIGEGLDLDDLSFQQLRTLEEDMVASIGKIRERKFHVIKTRTDTCKKKVKSLEQMNGNLLLELKEKCVIHPQFILHDEGDEESAVALANGASTLYAFCQHHTHLNLPHHAEALPQQQQPFKTHDLRLA 236
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca06g01294 236 Coils Coil 85 105 - -
Cca06g01294 236 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Cca06g01294 236 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Cca06g01294 236 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Cca06g01294 236 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 236 - -
Cca06g01294 236 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 11 57 IPR002100 GO:0003677|GO:0046983
Cca06g01294 236 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Cca06g01294 236 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Cca06g01294 236 SUPERFAMILY SRF-like 2 96 IPR036879 GO:0003677|GO:0046983
Cca06g01294 236 Gene3D - 14 104 IPR036879 GO:0003677|GO:0046983
Cca06g01294 236 ProSiteProfiles K-box domain profile. 85 177 IPR002487 GO:0003700|GO:0005634|GO:0006355
Cca06g01294 236 CDD MADS_MEF2_like 2 77 IPR033896 GO:0000977|GO:0045944
Cca06g01294 236 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Cca06g01294 236 PANTHER FLORAL HOMEOTIC PROTEIN DEFICIENS ISOFORM X1 1 236 - -
Cca06g01294 236 Pfam K-box region 83 170 IPR002487 GO:0003700|GO:0005634|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca06g01294 Cca-Chr6 27672055 27674784 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca06g01294 1 222 MADS-box Gene Family AT3G54340 50.667 2.55e-66 203
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Cca06g01294 K-box 5.2e-19 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca06g01294 K09264 - gmx:100784496 417.542
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca06g01294 06 27672055 27674784 Cca06g01294 06 27672055 27674784 ECH