Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca06g01292 ATGCTTTACCAAACtccctatcctttcctctttccatttcatcccttgccttcttcctccatccctttccctCAGCTACTCACTCTCTCTTCTTTTCCTAATATCTTTTCCTCTCTGCCACCCATGGAAGCAGCCTTGAAGACCAATTTCAGAAAAGAACAAACTCCACAAAACTTCGTAGAGGAGTTTAGTGCGCCAAATGCCACCTCTTCTGACGACTTTTACGTTGACGACTTACTTGACTTCTCGCACGTCCAAGAAGAACCAGAACAACAAGACCCTGCTTTTCTATCCCTTCAACAACAAAACCACGCCCGTCAACCATCTACTTTCGAACCCGACTACGTCTCTGTTCCCGCTACCGAGCTAAGCGTTCCGGCGGATGACGTGGCGGACTTGGAGTGGCTCTCTCATTTCGTGGAGGATTCCTTCTCCGAATTCTCTGCGGCCTTCCCCACCGTAACGGAGAACCAGATGGGGTTCAAGGCGCAAGAGGCCAAGCCCGAACCGGAAAGCCCGCATTTCCGTTTCAAAACCCCGGTTCAGACGAAGGCCAGAAGCAAGCGAAGCCGTAACGGTGTTCGGGTTTGGCCACTGGGTTCCCCTTCCTTCACGGAGTGTtcctcaagctccaccaccacctcctcctcctcctcctcttcctccccttccaccaccacctTGCTTATATACACCAACTGCCTCCAAAGTTTAGACCACGTTTGTTCTCAGCCCAAGCCCAAAAAGCCCAAGAAGAAAACCTCCTCCGACACTCTGGCGCCACGACGCTGCAGCCATTGCGGCGTGCATAAAACCCCTCAATGGCGAACTGGGCCGCTCGGCCCAAAGACGCTCTGCAACGCCTGCGGGGTCCGTTTCAAGTCGGGCCGCCTCTTACCCGAATACAGGCCCGCTTGTAGCCCAACATTCTCAAGTGAATTACATTCTAACCACCACCGTAAAGTGCTGGAGATGCGGCGGAAGAAGGAGACGGTGGCTGGGGTTGAGAGTCTTGAGACCATAACCCCTGCTTCTGTTCCCAGTTTTTAA 1050 0.4686 MLYQTPYPFLFPFHPLPSSSIPFPQLLTLSSFPNIFSSLPPMEAALKTNFRKEQTPQNFVEEFSAPNATSSDDFYVDDLLDFSHVQEEPEQQDPAFLSLQQQNHARQPSTFEPDYVSVPATELSVPADDVADLEWLSHFVEDSFSEFSAAFPTVTENQMGFKAQEAKPEPESPHFRFKTPVQTKARSKRSRNGVRVWPLGSPSFTECSSSSTTTSSSSSSSSPSTTTLLIYTNCLQSLDHVCSQPKPKKPKKKTSSDTLAPRRCSHCGVHKTPQWRTGPLGPKTLCNACGVRFKSGRLLPEYRPACSPTFSSELHSNHHRKVLEMRRKKETVAGVESLETITPASVPSF 349
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca06g01292 349 Pfam GATA zinc finger 264 298 IPR000679 GO:0006355|GO:0043565
Cca06g01292 349 Gene3D - 254 331 IPR013088 GO:0006355|GO:0008270
Cca06g01292 349 MobiDBLite consensus disorder prediction 242 261 - -
Cca06g01292 349 SMART GATA_3 258 312 IPR000679 GO:0006355|GO:0043565
Cca06g01292 349 MobiDBLite consensus disorder prediction 160 223 - -
Cca06g01292 349 CDD ZnF_GATA 263 311 IPR000679 GO:0006355|GO:0043565
Cca06g01292 349 ProSitePatterns GATA-type zinc finger domain. 264 289 IPR000679 GO:0006355|GO:0043565
Cca06g01292 349 ProSiteProfiles GATA-type zinc finger domain profile. 258 294 IPR000679 GO:0006355|GO:0043565
Cca06g01292 349 PANTHER GATA TRANSCRIPTION FACTOR 43 332 - -
Cca06g01292 349 MobiDBLite consensus disorder prediction 202 223 - -
Cca06g01292 349 PANTHER GATA TRANSCRIPTION FACTOR 43 332 - -
Cca06g01292 349 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 260 320 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca06g01292 Cca-Chr6 27655723 27657042 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca06g01292 43 349 C2C2-Gata Transcription Factor Family AT5G66320 47.536 1.70e-68 216
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Cca06g01292 GATA 2.1e-16 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca06g01292 - - var:108335072 444.891
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca06g01292 06 27655723 27657042 Cca06g01292 06 27655723 27657042 ECH