Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca06g01291 ATGGATTGGCTCCAAACCATTATAGTGATGATGATGGTAACACTACCACTGGTACTCGTGTTGGGAAGACGTGGAAAAGCCCCATATCCGCCAGGACCAAAAGGGTTACCCATAATAGGAAACATGCTAATCATGGACCAACTAACCCACCGGGGCCTCGCCACGCTGGCAAAACAATACGGCGGCGTTTTCCACCTCCGCATGGGCTTCCTCCACATGGTCGCCATCTCGGAGCCCGAGGCCGCGCGCCAAGTGCTCCAAGTCCAAGACAACGTCTTCTCCAACCGCCCCGCCACCATCGCCATCAGCTACCTCACCTACGACCGCGCCGACATGGCCTTCGCCCACTACGGCCCCTTCTGGCGCCAGATGCGCAAACTCTGCGTCATCAAGCTCTTCAGCCGCAAGCGCGCCGAGTCCTGGCGCTCCGTCCGGGAGGAGGTCGACGTCGCCGTCCGCTCCGTCGCCTCCTCCGCCGGAAAACCAGTCAACATCGGGGAACTGGTTTTCAACCTGACCAAGAACATTATCTACCGCGCGGCGTTCGGGTCGAGCTCGCAGGAGGGGCAAGACGAGTTCATTGGGATATTGCAGGAGTTCTCGAAGCTCTTCGGAGCGTTTAACATCGCAGACTTCATTCCTTTTCTTGGGCGCGTGGACCCGCAGGGGCTGAACGCGCGTCTCGCTAGGGCACGTGTCGCGCTCGATAGCTTCATTGATAAGATCATCGACGAGCATGTGCAGAAGAGCGATAAGAGAGACGATGGAGAGACGGACATGGTGGATGAGTTGCTCGCGTTTTACTCCGAAGAGGCCAAGTTGAACAATGAATCCGAGGATTTGCAGAACTCTATCAGACTCACTAAGGATAACATCAAGGCTATCATTATGGACGTAATGTTCGGAGGCACGGAAACGGTGGCGTCAGCGATCGAATGGGCCATGTCGGAGCTAATGAGAAGCCCAGAAGAGCTAAAGCGGGTCCAACAAGAGCTGGCGGACGTAGTGGGCCTGGACCGTCGGGTCGAAGAGTCCGATTTCGAGAAACTGACGTACCTCAAATGCGCCCTCAAAGAGACCCTCCGCCTCCACCCGCCGATCCCGCTCCTCCTCCACGAGACGGCGGAGGACGCGACGGTGGCCGGGTATTTGGTTCCGAAGAAGGCGCGCGTGATGATAAACGCGTGGGCCATTGGGAGGGACAAGAACAGCTGGGAGGAAGCGGAAAGTTTCAAACCGGGGCGGTTCCTGAAACCGGGCGTGGCAGATTTCAAAGGCAGCAACTTCGAGTTCATTCCATTCGGGTCGGGTCGGAGGTCCTGCCCCGGAATGCAGTTGGGGCTGTACGCGCTGGAGTTGGCGGTGGGTCACCTTCTCCACTGCTTCACGTGGGAATTGCCAGATGGGATGAAACCTAGTGAGATGGACATGGCTGACGTGTTCGGCCTCACCGCTCCAAGGGCCACGCGCCTCGTTGCCGTGCCAACCAAGCGCCTCCTATGCCCTCTCCTTTAA 1515 0.5789 MDWLQTIIVMMMVTLPLVLVLGRRGKAPYPPGPKGLPIIGNMLIMDQLTHRGLATLAKQYGGVFHLRMGFLHMVAISEPEAARQVLQVQDNVFSNRPATIAISYLTYDRADMAFAHYGPFWRQMRKLCVIKLFSRKRAESWRSVREEVDVAVRSVASSAGKPVNIGELVFNLTKNIIYRAAFGSSSQEGQDEFIGILQEFSKLFGAFNIADFIPFLGRVDPQGLNARLARARVALDSFIDKIIDEHVQKSDKRDDGETDMVDELLAFYSEEAKLNNESEDLQNSIRLTKDNIKAIIMDVMFGGTETVASAIEWAMSELMRSPEELKRVQQELADVVGLDRRVEESDFEKLTYLKCALKETLRLHPPIPLLLHETAEDATVAGYLVPKKARVMINAWAIGRDKNSWEEAESFKPGRFLKPGVADFKGSNFEFIPFGSGRRSCPGMQLGLYALELAVGHLLHCFTWELPDGMKPSEMDMADVFGLTAPRATRLVAVPTKRLLCPLL 504
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca06g01291 504 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 434 443 IPR017972 GO:0005506|GO:0016705
Cca06g01291 504 PANTHER CYTOCHROME P450 84A1-RELATED 5 503 - -
Cca06g01291 504 Pfam Cytochrome P450 30 486 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cca06g01291 504 PANTHER CYTOCHROME P450 FAMILY FERULATE HYDROXYLASE 5 503 - -
Cca06g01291 504 SUPERFAMILY Cytochrome P450 30 498 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cca06g01291 504 PRINTS P450 superfamily signature 302 319 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cca06g01291 504 PRINTS P450 superfamily signature 355 366 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cca06g01291 504 PRINTS P450 superfamily signature 432 441 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cca06g01291 504 PRINTS P450 superfamily signature 441 452 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cca06g01291 504 PRINTS E-class P450 group I signature 57 76 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cca06g01291 504 PRINTS E-class P450 group I signature 81 102 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cca06g01291 504 PRINTS E-class P450 group I signature 172 190 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cca06g01291 504 PRINTS E-class P450 group I signature 291 308 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cca06g01291 504 PRINTS E-class P450 group I signature 311 337 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cca06g01291 504 PRINTS E-class P450 group I signature 354 372 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cca06g01291 504 PRINTS E-class P450 group I signature 394 418 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cca06g01291 504 PRINTS E-class P450 group I signature 431 441 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cca06g01291 504 PRINTS E-class P450 group I signature 441 464 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cca06g01291 504 Coils Coil 271 291 - -
Cca06g01291 504 Gene3D Cytochrome P450 22 498 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca06g01291 Cca-Chr6 27615447 27618701 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca06g01291 37 503 Monolignol Biosynthesis Gene Families AT4G36220 77.167 0.0 772
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca06g01291 K09755 - gmx:100783430 857.44
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca06g01291 06 27615447 27618701 Cca06g01291 06 27615447 27618701 ECH