Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca06g01289 ATGGAACCGCACCTTCAGCACCCCCCGGAACCCCCACCGGCGGAGGTTTCGCTCCGCGGCGCCGGTGACTTGGAGAACTCGCAGCTGCTTGGAGCCCCTGTCGCGGAGGCTCGCGACGTTGACCAAAACGACGGGTCTTGCGTCGCCGTTTTGAAGCGGAAACGTGGACGTCCGGCCAAGGGAGACCGCGTCGTCAAAACGACGCCGCCGGCGTCCAGGCAGAAGAGGGACGAGGAGGATGTTTGCTTCATATGCTTCGACGGCGGAAGCCTCGTCCTCTGCGATCGCCGGGGATGTCCTAAAGCTTATCATCCGTCGTGTATTAAGCGAGACGAGGCTTTTTTTCGCTCGAAGGCTAAATGGAATTGTGGTTGGCATATATGTAGCATTTGTGGGAAGGGATCGCATAATATGTGCTATACTTGTACATATTCTTTGTGCAAGGGATGCACAAAAAAAGCTGATTTTGTCTGTGTCAGAGAAAATAAAGGTTTGTGTGGAATCTGCAAGAGGACTATAATGCTGATAGAGAATTGCGACCAGGGAGATAAGTCAGTGTGTGATGTGGATTTTGATGACAAGAGCAGCTGGGAGTATCTTTTCAAGGTGTACTGGACTTATTTGAAGGAGAAGCTATGTTTGACTTTTGATGAGATCCTTCAAGCTAAAAATCCATGCAAAGGAGTTGCAAGATTAGAAGCATCTGTTGCTGCTGTGGATGTTTCATCACTAGTCTCTTCAGGGAGGGTGCTGTCTATCAGTGATTTTGTTGATGATAAACCATGGCACTATCAGGATCCAACCGGGAAAGTTCAAGGACCTTTCTCTTTATTACAGCTGTATAAATGGAATGCAAGCGGGTATTTTCCTCCAGATCTCAAAGTATGGAGGATAGATGAGACACTAGATAACTCTACATTGTTAACTGATGTGCTGAGTGGGAAGTATTCAAAAAATGTGTCATTGCCATACAACAGTGAACAGCTGTCTTTGGGGTCCAATATTACTTCAGAAAATAAGGAAAATAGTCAGGATTGTGTTGAGAACGTGACAAGGAATGAAAATTCTGCAATCCACCAAATTGTCGAGCATGGTGGGGAGCAAAAAGTGGCCAATACTAGTACACAATCTAATGGTAAAGATGAATCTGTTAGGAGCAATGGTTGGCATTCTCAGTCTCCTGGTTGGACTATACAAGCAGATGGGAATAAAAATGAGGGGCAAAGCGGAAATTTTGAAAGGAAGGAGGAGTCATCCAAATGCGAAATTTCCTGTCATGACGCCCCCCTTGTATTGTCTTCTCAGGACTGCCCACCAGTCAACTCTATACCTTCAACTGCATTTTCTGAGAAATTGAATGAGAATCCTTCTGATAAATTAATGGAAGTTCAGAAGATTGAGATAAAGTCTCCAGATGATGGAAATTTTGACTTAAACAGAATTTCTGAGGGTCAAAGTAACAGTGGGCAATGTTGTCAGAAACAATCAGAGAGTGAGGAGAATTCAGGGCTATCTTCTGGTCAGAACTGGAGAGCCCCTGATGTAGCTCATCCTGATTGTAACAACTTAAATACATGGCTGTGTTCAATCTTTGGCGAAGCAAATGATTTGGAAGAGTCAGTTTCAGATCTGTTGGCTGAAGTGGAGGCAATGGAAACATTTGGTGGCTTGGAATCTCCCACTTCAATCATGAAATGTGGCGAGGAGTTGGCTGACGGTTCTATAACTGATTGTCTTAGTTTTGCAGATGAGTTTAGCCCCATGCTTGAAGCAGGTAAAGGAGATGCACTTAGCTCCTCCGGTGATTTACAATTACCATCTCAAACCACAACACCAGATGAACCGTTTAAGCAAGCGGATGTATATCATCATCAAAGAACATCTGCGGAGCATTCATCAAAGGGTTCAGAAGTTGAGGTGCGTACAAAGAACAGCATCAGTCTATGA 1947 0.4494 MEPHLQHPPEPPPAEVSLRGAGDLENSQLLGAPVAEARDVDQNDGSCVAVLKRKRGRPAKGDRVVKTTPPASRQKRDEEDVCFICFDGGSLVLCDRRGCPKAYHPSCIKRDEAFFRSKAKWNCGWHICSICGKGSHNMCYTCTYSLCKGCTKKADFVCVRENKGLCGICKRTIMLIENCDQGDKSVCDVDFDDKSSWEYLFKVYWTYLKEKLCLTFDEILQAKNPCKGVARLEASVAAVDVSSLVSSGRVLSISDFVDDKPWHYQDPTGKVQGPFSLLQLYKWNASGYFPPDLKVWRIDETLDNSTLLTDVLSGKYSKNVSLPYNSEQLSLGSNITSENKENSQDCVENVTRNENSAIHQIVEHGGEQKVANTSTQSNGKDESVRSNGWHSQSPGWTIQADGNKNEGQSGNFERKEESSKCEISCHDAPLVLSSQDCPPVNSIPSTAFSEKLNENPSDKLMEVQKIEIKSPDDGNFDLNRISEGQSNSGQCCQKQSESEENSGLSSGQNWRAPDVAHPDCNNLNTWLCSIFGEANDLEESVSDLLAEVEAMETFGGLESPTSIMKCGEELADGSITDCLSFADEFSPMLEAGKGDALSSSGDLQLPSQTTTPDEPFKQADVYHHQRTSAEHSSKGSEVEVRTKNSISL 648
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca06g01289 648 MobiDBLite consensus disorder prediction 1 35 - -
Cca06g01289 648 MobiDBLite consensus disorder prediction 592 648 - -
Cca06g01289 648 Pfam GYF domain 262 300 IPR003169 GO:0005515
Cca06g01289 648 MobiDBLite consensus disorder prediction 1 15 - -
Cca06g01289 648 ProSiteProfiles GYF domain profile. 259 313 IPR003169 GO:0005515
Cca06g01289 648 Gene3D - 261 318 IPR035445 -
Cca06g01289 648 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 75 167 IPR013083 -
Cca06g01289 648 SUPERFAMILY GYF domain 257 313 IPR035445 -
Cca06g01289 648 MobiDBLite consensus disorder prediction 468 513 - -
Cca06g01289 648 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 44-RELATED 243 519 - -
Cca06g01289 648 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 44-RELATED 537 644 - -
Cca06g01289 648 MobiDBLite consensus disorder prediction 479 509 - -
Cca06g01289 648 MobiDBLite consensus disorder prediction 617 638 - -
Cca06g01289 648 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 44 21 233 - -
Cca06g01289 648 MobiDBLite consensus disorder prediction 367 407 - -
Cca06g01289 648 CDD PHD5_NSD 81 126 - -
Cca06g01289 648 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 44 243 519 - -
Cca06g01289 648 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 44 537 644 - -
Cca06g01289 648 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 44-RELATED 21 233 - -
Cca06g01289 648 SMART PHD_3 81 127 IPR001965 -
Cca06g01289 648 SUPERFAMILY FYVE/PHD zinc finger 53 127 IPR011011 -
Cca06g01289 648 MobiDBLite consensus disorder prediction 600 615 - -
Cca06g01289 648 MobiDBLite consensus disorder prediction 367 415 - -
Cca06g01289 648 CDD GYF 262 314 IPR003169 GO:0005515
Cca06g01289 648 SMART gyf_5 260 315 IPR003169 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca06g01289 Cca-Chr6 27587563 27591488 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca06g01289 79 159 PHD Transcription Factor Family AT4G14920 35.802 1.90e-06 49.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca06g01289 - - ccaj:109800765 1291.56
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca06g01289 06 27587563 27591488 Cca06g01289 06 27587563 27591488 ECH