Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca06g01288 ATGGAGGAACCGCCTCAACCGCAGCCCCAGCCACCGCCGCCCACCGCTGCTAGGGATTCGCGCCTGCTTGGAGTCCCCGTTGCGCAGCGCGACCCGGAAGGAGACGCTGCTTGTTGCGCGCCCAAATTGGAGGTTGCCGTCGTGGACGCTGCCGTTTTGAAACGCAAGCGCGGTCGTCCGGCCAAGGGAGCTCCGAAAGTGGCGCCTCCGGTCAGGCAGAAGAAGGACGAGGAGGACGTTTGTTTCATTTGCTTCGACGGTGGGAGTCTCGTTCTCTGCGATCGCCGGGGTTGTCCTAAGGCGTATCATCCCTCATGTATTAAGCGAGACGAAGCGTTCTTCCGATCAAAGGCCAAGTGGAATTGCGGTTGGCATATATGTAGCGTTTGTCAGAAGGCGGCACATTATATGTGCTATACTTGCACATATTCTTTGTGCAAGGGATGCATAAAAGATGCTGATTTTGTTTGTGTCAGAGAGAATAAAGGTATGTGCGGAATATGCATGAGAACTATAATGCTGATTGAGAACAGTGCCCAGGGAAATAAGGAAATGTGCGAAGTGGATTTTGATGACAAGAGCAGCTGGGAGTATCTTTTCAAGGTGTACTGGATTTATTTGAAAGGGAAGCTATCTTTAACATTTGATGAGCTCCTTCGAGCTAAAAACCAATGGAAAGGTGTTGCTCCTATGAGTTGCAAGCAAAGTCCCCATGAACTTTATCATCTTAGAGATGACAAAGGTTCTGGTTCTGAGAACTCCTGTATAGATATAGAGTCAAATAATTTGAAGAACAAGAGGCCCAGAAGACAGCCAAAGCTTCTCAGTAAGGGTGATTGCTTGGATAATTGGATAACTTCAGGTGGTGACAGTGGTGTGTCTTTGACTGATTGCACAAAATGGGCATCAAAGGAGCTTCTAGAGTTTGTTGCACATATGAAAAATGGTGATACGTCTCTCCTGTCTCAATTTGATGTTCAGAATCTCTTGCTAGAGTATGTAAAGAAAAATAATCTTTGTGATCCTCAACAGAATTCCCAAATTGTTTGCGACTCTAGACTATTAAATTTGTTTGGAAAAGCATGTGTTGGCCACATGGAAATTCCAAAGCTACTTGAATCCCACTTTCTTTTAAGACGCAATGGCCCTGCGGATAATACTTTTGGAGTAGGAATTATTAATGCTGTTGCTAATGAAGGGGAAGGCCATGACAATTACAATAAGCAGTTGATGTTAGTTAATGACAAGGGGTGTAAAAAGGATGATGTTCTAGTGCCACAAAATAATCCAGATGCATATGCTGCAATAGATGCTCACAACATTAAATTGATTTACTTGCGGCGAAGTCTGATGGAGAATCTAACTGAAGATATTGAAAAGATTCATGAGAAGATTGTTGGTGCATTTGTGCGAATAAGAATCTGTGGTGGTGATCAAAAACAAGATATGTATAGACTTGTACAAGTTGTAGGTACAAGCAAGGTTGCTCAACCTTACAAAATTGGCACAAGAACAACTGATATTAAGCTTGAAATTTTAAACTTAAACCGGAAGGAGGTCATACCAATTGGTGAAATTTCTAATCAGGAGTTCTCTGAGGATGAATGCAAGCGGTTGCGTGAGAGTATAAAATATGGGCTTTCAAAGAGATTGACTGTGGGAGAGATTCTGGACAAAGCATTGACACTTCAAGCAATTAGAGTTAATGATTTGTTGGAAGCTGAGATATTGCGGCTTAATCATCTCCGTGATAGAGCAAGTGAAAACGGGCATAGAAAAGAGCTTAAAGAATATGTGGAGAAGTTGCAGCTACTCAATTCTCCAGAGGAACGTGAACGCAGGTTGCAAGAAATTCCAGATGTACACTCTGACCCCAATTTGGATTCAATGTTTGAGTCTGATGAAGATGATGGAGAGTCAGATGAAAGGAAGCAAGATAGCAATATATTATCCAAATGTCTTGGGCTTGATAGAAGAGAGGGGGGTTCTATCTTTCCAAGAAATTCAAACAGTGTCTTCAATGACATGGGATGCAAAACACAAGACTTGGCCCCTACCCATGAACCGATAGGGAATATCTGCACACCAAAGAATCCTATCAATCGTGATGATACAGCTATTGATGATAACACCAATGCAGTTGTGAAATCAGAAGTTTCTAGTGTTGCGTTGGACATTTCATCATCGCTTCTTCCTACTGGGATGGAGCAGCCATTTAATAATTCTTTGAATGATAGATCATGGCATTATCAGGATCCAACTGGGAAGATTCAAGGACCTTTTTCTATGTTGCAGCTGTACAAGTGGAATACAACTGGAGGTTTCCCTCCAGATCTTAGAATATGGAGGATAGATGAGAAACAGGATAACTCTATATTGTTAACCGATGCACTAAGTGAGAAGTTTTCAAAACATGTGTCATTGGCATTAAACAGTCAATTGCTCTCTCTAGGGGTCAGTGTTACATTGGATAATAAAGATAACAGTCAGGATGCTGAGAAGAAAGGAACAAAGAATGAAACATCCACAGACGGGCAAATTATTGAACAGAGGAAGGAACAAAAGGTGGATAATACTTCTACTCAGTCTGATGGTAAAGATGAACCTGTTAGGAGCAATGGATGGCATGGCCAACTGCATGGATACCCATCACTACTATCAACTGCCATTCCTGAGAAATTGAATGAGAATTCTTCTGATAAATTAAGGAAAAGTCATGGGATTGTGGGGAACTCAAAAGATAATGGAAATAATGGCTCGAACAGGACGTCTGATGGGCAGAGTAATAGTGGGCAGAGTTATCAGAAGCAATCAGATAGTGAAGAGAATTCAGGGCAATCTTCTGGACATACCTGGAGACACCCTAATGTAAATAGTTCTTCCAATTGCTTGGTTACCACATCAGCTCATGTTTCTGGTACAAAAACACCACCCCATAAGCTGGGATTTGATTTGCATAATCCTCCTTCCCCTCCAGCATGTAATACATCTACATGGCAGGCAATCATTGGTGAGCCCAATGATTTTGATGAATCAGTTTCTGATCTGTTGGCAGAAGTGGAAGCAATGGAGTCCCTTGGTGGCTTGGAATCTCCTACTTCAATCATGAAATGTAATGAGGATTTGACTGAAGGTTCTAAAAATGATTGTCTCAGTTTTGTTGCAGAGCTTAGCCCAATGCTTGATGCGGGTAAAGGTGATGCACTGTGCTCCACTGGTGATTTAAACTTACCATCTCAGCCGACAGCAGCAGAGGAACCATTACGGCAAGCAGATGTACATGACCATCATCATCAAAGAATTTCTATGGAGCATTCTTCAAGAAGTTCTAAAATTGAGGTTGGTACGAAGAATGTTAGTGTTTCATGTAATCAATGGGATTCGAGCTCAGAAAATTCACCCATCGTTCCACCCCCTGCAACATTGGGCCTGGCAGTAGATACCACTTGGAGACTTGGTTTAGAGAATACACACTTGGGATGGAGTGGAATTGATCAAGGAAATGCAAATGTGGGTTGGGGAGTAGGACAGACAGCAGTGCAGGAAAACAGGAGCTCAAATTCATACACATCTGTAGTAACTCCAGGCTTTGGGGATAGCCAAACAAGATATGGCAACGATCGATTTTCTGCACCCAGAGATCGGGGTTTTCAAGGTCATGGTAGGGAATCAGGTTTTGGTAGAAGCAGAATGGCATATAACAGGCAACCGTCATATGGTGTTGGAAATGGAGGCTCATATAGGCCTCTGCCCAAAGGGCAGCGAGTTTGTAAATTTTATGAAGGTGGGTACTGTAAGAAGGGATCATCCTGTGATTACTGGCACCCATGA 3831 0.4273 MEEPPQPQPQPPPPTAARDSRLLGVPVAQRDPEGDAACCAPKLEVAVVDAAVLKRKRGRPAKGAPKVAPPVRQKKDEEDVCFICFDGGSLVLCDRRGCPKAYHPSCIKRDEAFFRSKAKWNCGWHICSVCQKAAHYMCYTCTYSLCKGCIKDADFVCVRENKGMCGICMRTIMLIENSAQGNKEMCEVDFDDKSSWEYLFKVYWIYLKGKLSLTFDELLRAKNQWKGVAPMSCKQSPHELYHLRDDKGSGSENSCIDIESNNLKNKRPRRQPKLLSKGDCLDNWITSGGDSGVSLTDCTKWASKELLEFVAHMKNGDTSLLSQFDVQNLLLEYVKKNNLCDPQQNSQIVCDSRLLNLFGKACVGHMEIPKLLESHFLLRRNGPADNTFGVGIINAVANEGEGHDNYNKQLMLVNDKGCKKDDVLVPQNNPDAYAAIDAHNIKLIYLRRSLMENLTEDIEKIHEKIVGAFVRIRICGGDQKQDMYRLVQVVGTSKVAQPYKIGTRTTDIKLEILNLNRKEVIPIGEISNQEFSEDECKRLRESIKYGLSKRLTVGEILDKALTLQAIRVNDLLEAEILRLNHLRDRASENGHRKELKEYVEKLQLLNSPEERERRLQEIPDVHSDPNLDSMFESDEDDGESDERKQDSNILSKCLGLDRREGGSIFPRNSNSVFNDMGCKTQDLAPTHEPIGNICTPKNPINRDDTAIDDNTNAVVKSEVSSVALDISSSLLPTGMEQPFNNSLNDRSWHYQDPTGKIQGPFSMLQLYKWNTTGGFPPDLRIWRIDEKQDNSILLTDALSEKFSKHVSLALNSQLLSLGVSVTLDNKDNSQDAEKKGTKNETSTDGQIIEQRKEQKVDNTSTQSDGKDEPVRSNGWHGQLHGYPSLLSTAIPEKLNENSSDKLRKSHGIVGNSKDNGNNGSNRTSDGQSNSGQSYQKQSDSEENSGQSSGHTWRHPNVNSSSNCLVTTSAHVSGTKTPPHKLGFDLHNPPSPPACNTSTWQAIIGEPNDFDESVSDLLAEVEAMESLGGLESPTSIMKCNEDLTEGSKNDCLSFVAELSPMLDAGKGDALCSTGDLNLPSQPTAAEEPLRQADVHDHHHQRISMEHSSRSSKIEVGTKNVSVSCNQWDSSSENSPIVPPPATLGLAVDTTWRLGLENTHLGWSGIDQGNANVGWGVGQTAVQENRSSNSYTSVVTPGFGDSQTRYGNDRFSAPRDRGFQGHGRESGFGRSRMAYNRQPSYGVGNGGSYRPLPKGQRVCKFYEGGYCKKGSSCDYWHP 1276
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca06g01288 1276 Pfam Plus-3 domain 440 543 IPR004343 GO:0003677
Cca06g01288 1276 ProSiteProfiles Zinc finger C3H1-type profile. 1251 1276 IPR000571 GO:0046872
Cca06g01288 1276 SUPERFAMILY GYF domain 739 798 IPR035445 -
Cca06g01288 1276 ProSiteProfiles Zinc finger PHD-type profile. 78 144 IPR019787 -
Cca06g01288 1276 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 44-RELATED 986 1276 - -
Cca06g01288 1276 SUPERFAMILY FYVE/PHD zinc finger 62 125 IPR011011 -
Cca06g01288 1276 ProSitePatterns Zinc finger PHD-type signature. 81 141 IPR019786 -
Cca06g01288 1276 Coils Coil 569 589 - -
Cca06g01288 1276 SUPERFAMILY CCCH zinc finger 1251 1275 IPR036855 GO:0046872
Cca06g01288 1276 Pfam GYF domain 748 789 IPR003169 GO:0005515
Cca06g01288 1276 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 44-RELATED 14 978 - -
Cca06g01288 1276 ProSiteProfiles Plus3 domain profile. 435 568 IPR004343 GO:0003677
Cca06g01288 1276 MobiDBLite consensus disorder prediction 1209 1228 - -
Cca06g01288 1276 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 73 169 IPR013083 -
Cca06g01288 1276 MobiDBLite consensus disorder prediction 1 26 - -
Cca06g01288 1276 SUPERFAMILY Plus3-like 436 564 IPR036128 GO:0003677
Cca06g01288 1276 Pfam SWIB/MDM2 domain 303 376 IPR003121 -
Cca06g01288 1276 Gene3D SWIB/MDM2 domain 293 382 IPR036885 -
Cca06g01288 1276 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 44 986 1276 - -
Cca06g01288 1276 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 44 14 978 - -
Cca06g01288 1276 Gene3D - 436 565 IPR036128 GO:0003677
Cca06g01288 1276 CDD GYF 745 798 IPR003169 GO:0005515
Cca06g01288 1276 MobiDBLite consensus disorder prediction 899 961 - -
Cca06g01288 1276 MobiDBLite consensus disorder prediction 1 16 - -
Cca06g01288 1276 Gene3D - 747 805 IPR035445 -
Cca06g01288 1276 ProSiteProfiles SWIB/MDM2 domain profile. 295 378 IPR003121 -
Cca06g01288 1276 MobiDBLite consensus disorder prediction 609 650 - -
Cca06g01288 1276 CDD SWIB-MDM2_like 301 376 - -
Cca06g01288 1276 SMART rtf1 435 545 IPR004343 GO:0003677
Cca06g01288 1276 MobiDBLite consensus disorder prediction 827 873 - -
Cca06g01288 1276 ProSiteProfiles GYF domain profile. 745 799 IPR003169 GO:0005515
Cca06g01288 1276 SMART swib_2 298 381 IPR019835 -
Cca06g01288 1276 SMART gyf_5 746 801 IPR003169 GO:0005515
Cca06g01288 1276 MobiDBLite consensus disorder prediction 826 879 - -
Cca06g01288 1276 SMART PHD_3 80 126 IPR001965 -
Cca06g01288 1276 SUPERFAMILY SWIB/MDM2 domain 301 377 IPR036885 -
Cca06g01288 1276 MobiDBLite consensus disorder prediction 910 961 - -
Cca06g01288 1276 CDD PHD5_NSD 80 125 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca06g01288 Cca-Chr6 27563743 27572239 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca06g01288 78 161 PHD Transcription Factor Family AT5G36670 35.632 2.43e-06 50.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SWI/SNF-BAF60b Cca06g01288 Plus-3 3.3e-21 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca06g01288 - - aprc:113869503 2118.97