Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca06g01286 ATGCGAACGCTTTGTGATGCTTGTGAGAGTGCGGCGGCTATAGTTTTCTGCGCCGCTGATGAGGCTGCACTTTGCCGTGCCTGTGATGAGAAGGTTCACATGTGCAATAAGCTAGCTAGTAGGCATGTGAGGGTTGGTCTTGCAAGTCCAAGTGATGTGCCACGGTGTGACATATGTGAGAATGCGCCTGCTTTCTTCTATTGCGAGACAGATGGAAGTTCCCTTTGTTTGCAGTGTGATATGTTAGTTCATGTTGGAGGTAAAAGAACGCATGGAAGATATCTTCTGTTTAGGCAGAGAGTTGAGTTTCCAGGAGACAAATCTAGTCATGGTGAAAATCCGGGTTCACAACCACTGGAACCAGGTGAGGCTAAAAGAGGGCAAAATCCACTTCCCAAACTAAAAATGGGAGAGAAGCAACAAAATCACAGGATGCCTATGGTTCCAACGCCAGGACCTGATGCTGATGGCCATACCAAGATGGAAACCAAAATGATTGATTTGAACATGAAGCCTAATAGAATACATGAACAAGCATCAAATAATCAGCCATAA 555 0.4523 MRTLCDACESAAAIVFCAADEAALCRACDEKVHMCNKLASRHVRVGLASPSDVPRCDICENAPAFFYCETDGSSLCLQCDMLVHVGGKRTHGRYLLFRQRVEFPGDKSSHGENPGSQPLEPGEAKRGQNPLPKLKMGEKQQNHRMPMVPTPGPDADGHTKMETKMIDLNMKPNRIHEQASNNQP 184
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca06g01286 184 CDD Bbox1_BBX-like 4 47 - -
Cca06g01286 184 PANTHER B-BOX ZINC FINGER PROTEIN 22 1 183 - -
Cca06g01286 184 Pfam B-box zinc finger 52 91 IPR000315 GO:0008270
Cca06g01286 184 Pfam B-box zinc finger 3 42 IPR000315 GO:0008270
Cca06g01286 184 PANTHER SALT TOLERANCE-LIKE PROTEIN 1 183 - -
Cca06g01286 184 CDD Bbox1_BBX-like 56 96 - -
Cca06g01286 184 ProSiteProfiles Zinc finger B-box type profile. 1 47 IPR000315 GO:0008270
Cca06g01286 184 ProSiteProfiles Zinc finger B-box type profile. 51 96 IPR000315 GO:0008270
Cca06g01286 184 SMART bboxneu5 1 47 IPR000315 GO:0008270
Cca06g01286 184 SMART bboxneu5 51 96 IPR000315 GO:0008270
Cca06g01286 184 MobiDBLite consensus disorder prediction 104 159 - -
Cca06g01286 184 Gene3D Classic Zinc Finger 2 91 - -
Cca06g01286 184 SUPERFAMILY B-box zinc-binding domain 48 86 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca06g01286 Cca-Chr6 27540532 27543928 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca06g01286 1 183 C2C2-CO-like Transcription Factor Family AT4G38960 63.388 7.08e-75 221
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF DBB Cca06g01286 zf-B_box 6.1e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca06g01286 - - gmx:100780544 382.874
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca06g01286 06 27540532 27543928 Cca06g01286 06 27540532 27543928 ECH
Cca04g00389 04 3935994 3937841 Cca06g01286 06 27540532 27543928 ECH
Cca07g00101 07 1340968 1342333 Cca06g01286 06 27540532 27543928 ECH