Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca06g01283 ATGCCTACGCTTCTCCTCCTCGTGGTGTTATGCGCACCGCTCTTAACGTGCGCCGACCGCACCGCCGTAACCGTCGCGGAGATCCAAGCCTTGACGTCCTTCAAGCTCGACCTTCACGATCCCGCCGGAGCTCTCGACGCCTGGGATCCCTCGTCGCCGGCGGCGCCCTGCGACTGGCGCGGTGTCGGCTGCACTAACGGCCGAGTCACGGAGCTGCGTTTGCCTCGTCTTCAACTCGCTGGCAGACTCAGTGAGCGCGTTTCCGAGTTGCGCATGCTGCGCAAGTTAAGCCTTCGTTCGAACTCCTTCAACGGAACCATTCCTTCGTCGCTCTCCAAATGCACGCTCTTAAGGTCTGTTTTCTTGCAGGAGAACTCGTTCTCCGGCGACCTTCCGCCGGAGATCGCGAACCTCACTGGACTTCAGATTCTCAACGTCGCGCAGAACCGCCTCTCCGGCAGCGTCCCCGGCGAGCTTCCTCTCGGCCTCAAAACCCTAGACCTCTCGTCGAATGCATTCTCCGGAGAGATTCCGAGCTCCGTCGCGAATCTCTCTCAGGTCCAGCTTATAAACCTGTCGTACAACGAATTCTCCGGCGAGATTCCGGCGAGCCTCGGGGAGCTTCAGCAGCTGCAGTACCTCTGGCTGGACCACAACCTCCTCGGAGGAACTCTTCCTTCGGCGCTTGCTAACTGTTCTGCGCTTCTGCATCTGAGCATGGAAGGAAACGCGCTCAGCGGCGTGATTCCGACGGCGATTTCGGCTCTTCCAAGGCTTCAGGTAATGTCGCTCTCTGAGAACAACCTCACCGGCTCCGTTCCGGCTTCGGTTTTCTGCAACGGTTCGGTCCACGCGCCGTCGCTGCGGATTGTCCATCTCGGATTCAACGGTTTCACGGATTTCGTGGGGCCTGAGACGAGCACGTGTTTTAGCGTTCTTCAGGTTTTGGATATTCAGCACAATCGCATGCGAGGCACGTTTCCGTTGTGGTTGACCAACGTGACCACGTTGACCGTGCTTGATGTTTCGAGCAATACACTTTCCGGCGAGGTTCCGGCTCAAATAGGAAACCTCGTTAAGTTGGAGGAGCTGAAGATGGCTAATAATTCCTTGTCCGGCGCCATTCCGTTGGAACTCAAAAAATGTGGGTCCCTACGTGTCGTTGATTTTGAAGGCAACGAGTTTGGCGGAGATGTTCCTTCGTTTTTCGGCGATATGACTGGTCTGAAGGTATTATCTCTTGGTGGGAACCGCTTCTCCGGTTCGGTTCCGGTGAGTTTTGGAAACCTTTCATTGCTTGAAACATTGAGTTTGAGAGGTAATAGGTTGAATGGAAGTATGCCTGAGGTGATAATGAGATTGAATAATTTGACCACACTTGACCTTAGTGGAAACAAATTTACTGGTGAAGTTTTTGAGAGTGTTGGGAATTTGAATAGGTTGATGATTCTCAATCTGAGTGGCAATGGCTTCTCTGGAAAAATTCCTTCTAGTTTGGGGAATCTTTTTAGGTTAACTACGCTTGATTTGAGCAAACAGAATCTTTCTGGAGAGTTACCACTCGAGCTCTCGGGGTTGCCTAGTCTGCAAGTTGTGGCACTTCAGGAGAACAAGCTATCTGGGGATGTGCCTGAAGGGTTTAGCAGTTTGATGAGTTTGCAGTATGTGAATCTCAGCTCTAATGCCTTTACTGGGCATATTCCTGAAAACTATGGCTTTCTTCGTTCGCTGGCTGTTCTTTCGTTATCTGGTAATCACATTACAGGAACAATCCCTTCGGAAATTGGAAACTGCTCTGGTATTGAAACTCTCGAGCTTGGGTCGAATTCTTTGGCTGGTCACATTCCTGATGATCTCTCTCGCCTCACCCTTTTGAAAGTGCTTGATTTGAGTGGGAACAATTTAACTGGGGAGGTGCCTGAGGAAATCTCCAAATGCTCATCGTTAACCACGTTGCTGGTGGACCACAACCATCTTTCAGGGGCCATACCTGGCTCGATTTCGGGTCTGTCAAACCTAACAATGCTGGATCTCTCTGCTAATAACTTGAGTGGGGAAATTCCGAGTAATCTTTCTACGATCTCTAGTTTGGCGTACTTCAATGTCTCCGGAAATGACTTGGAAGGTTTATGTGGGAAGCCATTGGACACAAAATGCGAAGATGTAGATGATAGGGACAGAAAGAGGCTGATTGTTCTGGTTGTTGTCATTGCTTGTGGAGCTTTTGTACTAGTTTTATTTTGCTGCTTTTACGTTTTCAGTTTATTGAGATGGCGTAAAAGGCTGAAAGAAGGAGTATCGGGTGAAAAGAAAAAGAGTCCCGCCAGAGCCAGTTCTGGAACAAGTGGAGGTCGTGGCAGCACTGACAGTGGGGGACCAAAGCTAGTTATGTTCAACACCAAAATTACACTAGCGGAGACCATCGAAGCAACAAGACAATTCGACGAAGAGAACGTGCTGAGCAGAACAAGGTATGGATTAGTGTTCAAGGCGTGTTACAACGACGGAATGGTCCTTTCCATTCGCAGGCTCCCCGATGGATCATTGGATGAAAACATGTTCAGAAAAGAAGCCGAATCCCTGGGGAAGGTGAAGCACAGAAATCTAACAGTTCTCAGAGGTTACTACGCTGGACCACCTGACATGAGACTCCTAGTCTATGATTACATGCCCAATGGGAACCTTGCAACCCTCCTCCAAGAAGCTTCTCACCAAGATGGCCACGTTCTAAATTGGCCAATGCGACACCTCATTGCCCTAGGAATTGCCCGTGGTTTAGCCTTCCTACACCAATCCTCAACAGTTCATGGCGACGTGAAGCCACAAAATGTCCTCTTCGATGCAGATTTCGAAGCCCACTTATCAGATTTCGGGTTAGACAAGTTAACAATAGCCACCCCAGAAGCCTCCACTTCAACCTCCGTTGGCACGTTGGGTTACGTATCGCCAGAAGCAGTCTTAACAGGGGAAACCACAAAGGAGAGTGATGTCTACAGCTTTGGCATCGTGTTGCTTGAGCTACTAACAGGAAAACGACCTGTGATGTTCACCCAGGACGAAGACATAGTGAAGTGGGTGAAAAAACAACTGCAGAGGGGTCAAATAACGGAGCTATTAGAACCGGGTTTGCTTGAGTTGGACCCAGAATCATCAGAGTGGGAAGAGTTTTTACTAGGTGTAAAAGTTGGGTTGCTTTGCACAGCACCTGACCCTCTTGATCGACCAACCATGTCTGACATCGTTTTCATGCTTGAAGGTTGCCGAGTTGGTCCTGATATCCCATCCTCCGCAGATCCCACCTCTCAACCTTCTCCGGCATAA 3321 0.4995 MPTLLLLVVLCAPLLTCADRTAVTVAEIQALTSFKLDLHDPAGALDAWDPSSPAAPCDWRGVGCTNGRVTELRLPRLQLAGRLSERVSELRMLRKLSLRSNSFNGTIPSSLSKCTLLRSVFLQENSFSGDLPPEIANLTGLQILNVAQNRLSGSVPGELPLGLKTLDLSSNAFSGEIPSSVANLSQVQLINLSYNEFSGEIPASLGELQQLQYLWLDHNLLGGTLPSALANCSALLHLSMEGNALSGVIPTAISALPRLQVMSLSENNLTGSVPASVFCNGSVHAPSLRIVHLGFNGFTDFVGPETSTCFSVLQVLDIQHNRMRGTFPLWLTNVTTLTVLDVSSNTLSGEVPAQIGNLVKLEELKMANNSLSGAIPLELKKCGSLRVVDFEGNEFGGDVPSFFGDMTGLKVLSLGGNRFSGSVPVSFGNLSLLETLSLRGNRLNGSMPEVIMRLNNLTTLDLSGNKFTGEVFESVGNLNRLMILNLSGNGFSGKIPSSLGNLFRLTTLDLSKQNLSGELPLELSGLPSLQVVALQENKLSGDVPEGFSSLMSLQYVNLSSNAFTGHIPENYGFLRSLAVLSLSGNHITGTIPSEIGNCSGIETLELGSNSLAGHIPDDLSRLTLLKVLDLSGNNLTGEVPEEISKCSSLTTLLVDHNHLSGAIPGSISGLSNLTMLDLSANNLSGEIPSNLSTISSLAYFNVSGNDLEGLCGKPLDTKCEDVDDRDRKRLIVLVVVIACGAFVLVLFCCFYVFSLLRWRKRLKEGVSGEKKKSPARASSGTSGGRGSTDSGGPKLVMFNTKITLAETIEATRQFDEENVLSRTRYGLVFKACYNDGMVLSIRRLPDGSLDENMFRKEAESLGKVKHRNLTVLRGYYAGPPDMRLLVYDYMPNGNLATLLQEASHQDGHVLNWPMRHLIALGIARGLAFLHQSSTVHGDVKPQNVLFDADFEAHLSDFGLDKLTIATPEASTSTSVGTLGYVSPEAVLTGETTKESDVYSFGIVLLELLTGKRPVMFTQDEDIVKWVKKQLQRGQITELLEPGLLELDPESSEWEEFLLGVKVGLLCTAPDPLDRPTMSDIVFMLEGCRVGPDIPSSADPTSQPSPA 1106
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca06g01283 1106 SUPERFAMILY L domain-like 491 712 - -
Cca06g01283 1106 SMART LRR_sd22_2 160 186 - -
Cca06g01283 1106 SMART LRR_sd22_2 406 432 - -
Cca06g01283 1106 SMART LRR_sd22_2 208 234 - -
Cca06g01283 1106 SMART LRR_sd22_2 454 480 - -
Cca06g01283 1106 SMART LRR_sd22_2 670 693 - -
Cca06g01283 1106 SMART LRR_sd22_2 334 360 - -
Cca06g01283 1106 SMART LRR_sd22_2 622 645 - -
Cca06g01283 1106 PANTHER INACTIVE LEUCINE-RICH REPEAT RECEPTOR KINASE XIAO-RELATED 4 1102 - -
Cca06g01283 1106 Pfam Leucine rich repeat N-terminal domain 27 64 IPR013210 -
Cca06g01283 1106 SMART LRR_typ_2 358 382 IPR003591 -
Cca06g01283 1106 SMART LRR_typ_2 478 502 IPR003591 -
Cca06g01283 1106 SMART LRR_typ_2 574 598 IPR003591 -
Cca06g01283 1106 SMART LRR_typ_2 406 429 IPR003591 -
Cca06g01283 1106 SMART LRR_typ_2 670 694 IPR003591 -
Cca06g01283 1106 SMART LRR_typ_2 256 280 IPR003591 -
Cca06g01283 1106 SMART LRR_typ_2 622 646 IPR003591 -
Cca06g01283 1106 SMART LRR_typ_2 90 114 IPR003591 -
Cca06g01283 1106 SMART LRR_typ_2 526 549 IPR003591 -
Cca06g01283 1106 SMART LRR_typ_2 454 474 IPR003591 -
Cca06g01283 1106 SMART LRR_typ_2 430 453 IPR003591 -
Cca06g01283 1106 SMART LRR_typ_2 138 162 IPR003591 -
Cca06g01283 1106 SMART LRR_typ_2 208 232 IPR003591 -
Cca06g01283 1106 Gene3D Ribonuclease Inhibitor 162 280 IPR032675 -
Cca06g01283 1106 Gene3D Phosphorylase Kinase; domain 1 791 889 - -
Cca06g01283 1106 Gene3D Ribonuclease Inhibitor 472 728 IPR032675 -
Cca06g01283 1106 SUPERFAMILY L domain-like 27 299 - -
Cca06g01283 1106 ProSiteProfiles Protein kinase domain profile. 814 1093 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca06g01283 1106 Gene3D Transferase(Phosphotransferase) domain 1 890 1092 - -
Cca06g01283 1106 SUPERFAMILY Protein kinase-like (PK-like) 794 1094 IPR011009 -
Cca06g01283 1106 PRINTS Leucine-rich repeat signature 670 683 - -
Cca06g01283 1106 PRINTS Leucine-rich repeat signature 625 638 - -
Cca06g01283 1106 Pfam Protein kinase domain 824 1080 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca06g01283 1106 Pfam Leucine rich repeat 408 467 IPR001611 GO:0005515
Cca06g01283 1106 Pfam Leucine rich repeat 313 371 IPR001611 GO:0005515
Cca06g01283 1106 Pfam Leucine rich repeat 163 221 IPR001611 GO:0005515
Cca06g01283 1106 Pfam Leucine rich repeat 575 635 IPR001611 GO:0005515
Cca06g01283 1106 Pfam Leucine rich repeat 648 707 IPR001611 GO:0005515
Cca06g01283 1106 Pfam Leucine rich repeat 504 562 IPR001611 GO:0005515
Cca06g01283 1106 Gene3D Ribonuclease Inhibitor 24 161 IPR032675 -
Cca06g01283 1106 MobiDBLite consensus disorder prediction 774 788 - -
Cca06g01283 1106 SMART serkin_6 814 1083 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca06g01283 1106 Gene3D Ribonuclease Inhibitor 281 471 IPR032675 -
Cca06g01283 1106 MobiDBLite consensus disorder prediction 769 794 - -
Cca06g01283 1106 SUPERFAMILY RNI-like 238 564 - -
Cca06g01283 1106 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE FAMILY PROTEIN-RELATED 4 1102 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca06g01283 Cca-Chr6 27506329 27509980 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca06g01283 4 1106 Receptor kinase-like Gene Family AT4G36180 69.129 0.0 1503
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-VII-3 Cca06g01283 Pkinase 3.9e-35 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca06g01283 - - gmx:100795838 1918.66