Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca06g01280 ATGTCTGCCACCGGAGAAGATGTCGCTCCCGCCGTTGAAAAGCCGGTGGAAGAGGTGAAGGCGCCGAAGCCTGCGAAGGAGAAGAAGCCCAAGGCGCCGAAGGAAAAGAAGCCCAAACAGGCCAAAACCGCTTCACATCCTCCATATTTTCAGATGATTAAGGAGGCTCTGCTGGCTCTGAACGAGAAAGGAGGTTCGAGCCCTCACGCGATAGCGAAGTACATGGAGGAGAAGCACAAGGCGGTGCTCCCTGCGAATTTCAAGAAGATTCTAGGCCTGCAACTGAAGAACCAAGCCGCGAGAGGGAAACTCATGAAGATCAAGGCCTCGTACAAGTTATCCGAAACCGCGAAGAAGGAGAAAAAGGAGAGCGCAACCAAAGTCACCAAGGCCAACGCGGAGAAGAAGGAATCGCGCCCGAAACGAAGCAGGCGCGTAACCGCCACTGCTCCGAAAAGCAAGAAAGGCGAGGCGGTTAAGAAGGCTGGGCCGAAGAAGGCCAAGAAAGTGTCGACGCCCGCGAAGCCCAAGCAGCCCAAGTCCATTAGGTCCCCATCCAAGAGGGCCCGGAAAACTACCGTTGCC 585 0.5573 MSATGEDVAPAVEKPVEEVKAPKPAKEKKPKAPKEKKPKQAKTASHPPYFQMIKEALLALNEKGGSSPHAIAKYMEEKHKAVLPANFKKILGLQLKNQAARGKLMKIKASYKLSETAKKEKKESATKVTKANAEKKESRPKRSRRVTATAPKSKKGEAVKKAGPKKAKKVSTPAKPKQPKSIRSPSKRARKTTVA 195
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca06g01280 195 MobiDBLite consensus disorder prediction 113 164 - -
Cca06g01280 195 Gene3D - 40 126 IPR036388 -
Cca06g01280 195 PRINTS Histone H5 signature 59 76 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Cca06g01280 195 PRINTS Histone H5 signature 129 143 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Cca06g01280 195 PRINTS Histone H5 signature 168 185 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Cca06g01280 195 PRINTS Histone H5 signature 32 53 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Cca06g01280 195 MobiDBLite consensus disorder prediction 11 31 - -
Cca06g01280 195 ProSiteProfiles Linker histone H1/H5 globular (H15) domain profile. 45 115 IPR005818 GO:0000786|GO:0003677|GO:0006334
Cca06g01280 195 Pfam linker histone H1 and H5 family 46 112 IPR005818 GO:0000786|GO:0003677|GO:0006334
Cca06g01280 195 CDD H15 43 122 IPR005818 GO:0000786|GO:0003677|GO:0006334
Cca06g01280 195 PANTHER HISTONE H1 8 193 - -
Cca06g01280 195 MobiDBLite consensus disorder prediction 113 195 - -
Cca06g01280 195 SMART h15plus2 43 110 IPR005818 GO:0000786|GO:0003677|GO:0006334
Cca06g01280 195 MobiDBLite consensus disorder prediction 1 49 - -
Cca06g01280 195 PANTHER HISTONE H1 8 193 - -
Cca06g01280 195 MobiDBLite consensus disorder prediction 181 195 - -
Cca06g01280 195 SUPERFAMILY "Winged helix" DNA-binding domain 42 125 IPR036390 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca06g01280 Cca-Chr6 27445824 27446492 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca06g01280 33 132 Single Myb Histone (SMH) Gene Family AT1G72740 35.238 6.77e-09 52.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca06g01280 K11275 - gmx:100500169 244.973
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca06g01280 06 27445824 27446492 Cca06g01280 06 27445824 27446492 ECH