Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca06g01277 ATGTCAGCATCGCCTTCAACCACTGATAAATATGATGTTTTGCCGCCTGGTTTTGGAGGCAAACATTTACATAATCAATCAAAGGCTGAACATATTTCTCCGATTAAATGGAAATGTCCTTCTTCGTTTGTTTTGAGAGATAGTTGGCTCGTTGCAGCTGGTGAAGAAAGTACAGAGAAAAATGATCAAAAACAAAGAGAATTGAATGAGCTGGAAGCATTTTATCCTTCTATTTATGCCATTCCTCCAAACCCTTTCGTTTCTGTTGATGCGGAGAAGGAAAGCTACGATGATAGCATTACTCCTCTTATTCCCATTGAAGAAGAAGAGTCAGTAGAACATGTCAACAATGACATTGAAGAGTCACACAGTTTGCAACATTATGTACCCTCAACATCATCTCTCCTTAATTTACAAAGCGGTGAAAATTCAGTACTTGCCTTGTCTTATCCAGGGGCAGATTTTGTTGCAGCTACTGCCATTGTAGCTGCCATCATGAAAAGCAATGAGCAAGAAAGCATGATAGATGCAGATTCACTCCTTAATATGGTCAATGACCCCATAATAATTGAAAAAATAATTGACCAATATAGAACTGCTTCTTCTGACACTACCAGTACACCCTCAAATGATGCAAGTATACCTAAACCTGATACTTCATCAACTCCATTGCCTTCACCTACCCTTGCAATTGAAGCTTCTGAGTCTACATCCACAACCACAACTGTTTCACTGTTGACATCTGCACTTCATGAGCCTGCAActcctcctcctcctcctcctccgcctGTTTCTTTGTCTAGGGCTCAACTATCTGTTCCTCACGCACCAAATGAAATCATGCCCTCTTTAAATATCCACTCTCCACAGCGAGGGAAAAAGGAAAAAACACCATTGGCTTCTGCTGCAACAGGAAAACTGAACAAAGTGACAGTGCCTTCTGCTTCCTCAAACATGCATGCAGCTGTAAGCTCAGTACATTCTCAACCAAGTGCTGAGAAAGATGTCAAACATGGCAAAAGTCTTGTTAGAAAACATGATACTGATAAGCCAGACGTGAAGGACTCAGGAACCAGAATTTGTCGAGATTCGAGACTGCCATCTAAGAAAGCCATCGAATCGAGGAAAGTGAAATCCAAAGATCAGATACGATGCAAATTCTTTAAAACCTCAAAGGGTTGCCGTAAAGGTTCTGATTGTCTTTACCAGCATGATGAGTCAGTTCAGCGGGAAGCTGATAATGCTAAAAGATCAAAAGTCAAAAAAGAGGTTACGTGGAGGATGTAA 1287 0.3963 MSASPSTTDKYDVLPPGFGGKHLHNQSKAEHISPIKWKCPSSFVLRDSWLVAAGEESTEKNDQKQRELNELEAFYPSIYAIPPNPFVSVDAEKESYDDSITPLIPIEEEESVEHVNNDIEESHSLQHYVPSTSSLLNLQSGENSVLALSYPGADFVAATAIVAAIMKSNEQESMIDADSLLNMVNDPIIIEKIIDQYRTASSDTTSTPSNDASIPKPDTSSTPLPSPTLAIEASESTSTTTTVSLLTSALHEPATPPPPPPPPVSLSRAQLSVPHAPNEIMPSLNIHSPQRGKKEKTPLASAATGKLNKVTVPSASSNMHAAVSSVHSQPSAEKDVKHGKSLVRKHDTDKPDVKDSGTRICRDSRLPSKKAIESRKVKSKDQIRCKFFKTSKGCRKGSDCLYQHDESVQREADNAKRSKVKKEVTWRM 428
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca06g01277 428 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 6-RELATED 10 419 - -
Cca06g01277 428 MobiDBLite consensus disorder prediction 409 428 - -
Cca06g01277 428 MobiDBLite consensus disorder prediction 331 362 - -
Cca06g01277 428 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 45-RELATED 10 419 - -
Cca06g01277 428 MobiDBLite consensus disorder prediction 200 300 - -
Cca06g01277 428 MobiDBLite consensus disorder prediction 318 362 - -
Cca06g01277 428 ProSiteProfiles Zinc finger C3H1-type profile. 379 407 IPR000571 GO:0046872
Cca06g01277 428 MobiDBLite consensus disorder prediction 252 267 - -
Cca06g01277 428 MobiDBLite consensus disorder prediction 200 249 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca06g01277 Cca-Chr6 27413557 27415151 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca06g01277 35 121 Homeobox Transcription Factor Family AT4G02560 39.326 2.35e-06 48.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Cca06g01277 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca06g01277 - - ccaj:109800509 800.045
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca06g01277 06 27413557 27415151 Cca06g01277 06 27413557 27415151 ECH