Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca06g01272 ATGATGGAACCTCAACAAGCACAACCGAGCCAACAAAGCGAGGATGGTGGCAGTGGAAAAGGAGGGTTTCTGAGCAGGCAAAGTAGTACACGGTGGACTCCCACAAGCGACCAGATAAGAATACTGAAGGACCTTTACTACAACAATGGAATTAGATCCCCCAGTGCAGAGCAGATTCAGAGGATCTCTGCTAGGCTGAGGCAGTACGGTAAGATTGAAGGCAAGAATGTCTTTTATTGGTTCCAGAACCACAAAGCTCGAGAAAGGCAGAAGAAAAGGTTCACTTCTGATAATAATGTCCCCATGCAACAAAGAAATATTTCTGCTTCTGCTTCTGCTTGGAAACCTGATGACCCCCTTCACACCAAGTATTCTAACTTGTCTTCTACTGGGATCTCTCCTGCATCATCTTCTTCTGCTGAGATGGTTACTGTGGGGCAGATGGGAAATTATGGATATGGTTCTGTGCCCATGGAAAAAAGTTTTAGGGACTGCTCAATATCAGCTGGGGGTAGCAGTGGCCATGTTGGAGTAAACCACAACTTGGGATGGGTTGGTGTGGATCCATATTCCTCAGCCTACGCCAACTTCTTTGACAAAATAAGGCCAACTGAAGAAACCCTCgaagaagatgaagaagaagaggaTGGTGATGCTGAGATTGAAACCCTCCCTTTATTCCCTATGCACGGTGAGGACATTCATGGCTATTGCAACCTCAAGTCTAATTCTTATAACTATGATGGAAACACCTGGTATCATCACACTGAAGATGGGTTCAAGAATGGTTCTCGTGCTTCCTTGGAGCTCAGTCTCAACTCCTACACTCGCAGATCACCAGATTTCGCTTAA 852 0.4448 MMEPQQAQPSQQSEDGGSGKGGFLSRQSSTRWTPTSDQIRILKDLYYNNGIRSPSAEQIQRISARLRQYGKIEGKNVFYWFQNHKARERQKKRFTSDNNVPMQQRNISASASAWKPDDPLHTKYSNLSSTGISPASSSSAEMVTVGQMGNYGYGSVPMEKSFRDCSISAGGSSGHVGVNHNLGWVGVDPYSSAYANFFDKIRPTEETLEEDEEEEDGDAEIETLPLFPMHGEDIHGYCNLKSNSYNYDGNTWYHHTEDGFKNGSRASLELSLNSYTRRSPDFA 283
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca06g01272 283 Pfam Homeodomain 29 90 IPR001356 GO:0003677
Cca06g01272 283 Gene3D - 29 95 - -
Cca06g01272 283 SUPERFAMILY Homeodomain-like 9 92 IPR009057 -
Cca06g01272 283 PANTHER WUSCHEL-RELATED HOMEOBOX 1-RELATED 2 276 IPR044555 GO:0003700|GO:0099402
Cca06g01272 283 CDD homeodomain 30 92 IPR001356 GO:0003677
Cca06g01272 283 SMART HOX_1 27 95 IPR001356 GO:0003677
Cca06g01272 283 PANTHER PROTEIN WUSCHEL 2 276 - -
Cca06g01272 283 MobiDBLite consensus disorder prediction 1 34 - -
Cca06g01272 283 ProSiteProfiles 'Homeobox' domain profile. 25 91 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca06g01272 Cca-Chr6 27340730 27342554 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca06g01272 23 233 Wox Gene Family AT2G17950 45.382 1.37e-53 174
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-WOX Cca06g01272 Homeodomain 1.2e-17 CL0123