Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca06g01266 ATGAGAAACGGTTTTCCGGTGGGAGCGCCTCCAGAAATGGCGTGTTTGTTAGAGGAAATCCGACGAGAAAACGACGTTTGCAAGATGGACGTTGTTTCCACGTGCGTTGGAGCCGATCCCGAACTCGACGAGTTCATGGAAACCTACTGTGACATGCTGGTGAAATACAAATCTGATCTGACGCGGCCTTTTGACGAAGCCACCACCTTCCTCAGCAAGATCGAAACGCAGCTTAGCGATCTCTGCACTGGTTCTTCACTTCCAACCCTTTCTGGTTAG 279 0.5054 MRNGFPVGAPPEMACLLEEIRRENDVCKMDVVSTCVGADPELDEFMETYCDMLVKYKSDLTRPFDEATTFLSKIETQLSDLCTGSSLPTLSG 92
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca06g01266 92 SMART KNOX2_2 32 83 IPR005541 GO:0003677|GO:0005634
Cca06g01266 92 Pfam KNOX2 domain 35 82 IPR005541 GO:0003677|GO:0005634
Cca06g01266 92 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 7 87 - -
Cca06g01266 92 PANTHER ELK DOMAIN, HOMEOBOX KN DOMAIN, HOMEODOMAIN-LIKE PROTEIN-RELATED 7 87 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca06g01266 Cca-Chr6 27217631 27218045 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca06g01266 7 84 Homeobox Transcription Factor Family AT1G23380 79.747 2.18e-39 131
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca06g01266 - - ccaj:114914897 191.815