Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca06g01263 ATGGGTATGTGTTTCTCCGCCACCAAGGTCAGCGGCTCCAACAGCAACAACACCTCCAACCGCAACCGTAAATGTTCCGCCGCACCGCTGGAGACCGCGCCTGCGCCGGCGCAGAAGAAGCAGCAAACCTCGCATGGTCAACGGCGGCGGGCGACGGAGGATTCGCAGAAGAACGCACGTGCCAAGGATAAAGCGGGTGCGCGTCGGCAAGGGGGGCACGTGCCGTGTGGAAAGCGCACGGATTTCGGCTACGAGAAGGACTTCGACAAGAAATTCTCGCTCGGGAAATTGTTGGGACATGGTCAATTCGGTTACACCTACGTTGGAATTGATAAAGTGAATGGGGATCGTGTCGCCGTTAAGAGACTCGAGAAGGCCAAGATGGTTCTCCCCATAGCTGTTGAGGATGTTAAGCGAGAAGTCAAGATATTGAAAGAACTTACAGGCCATGAAAATGTGGTTCAGTTCTATAATGCTTTTGAGGATGATTCATATGTGTACATAGTTATGGAGTTATGTGAGGGTGGAGAACTGCTAGATCGGATATTGTCCAAGAAGGACAGTCGTTATACTGAAAAAGATGCGGCTGTGGTTGTAAGACAAATGCTCAAGGTTGCAGCTGAGTGTCATTTACATGGGTTGGTACATCGGGACATGAAACCAGAGAATTTTCTTTTCAAATCAACAAGAGAAGATTCACCTTTAAAGGCTACTGATTTTGGTTTGTCTGATTTCATAAAACCCGGGAAGAGGTTTCAAGATATTGTTGGCAGTGCTTACTATGTTGCACCAGAAGTGTTAAAACGGAAGTCAGGTCCAGAGTCAGATGTATGGAGTATTGGAGTGATTACATACATATTGCTTTGTGGGAGACGGCCATTTTGGGATAAGACTGAGGATGGTATATTCAAGGAGGTCTTACGGAACAAGCCTGATTTCCGGCGGAAACCATGGCCAACCATAAGCAACCCTGCAAAAGATTTTGTGAAGAAATTGTTGGTAAAAGATCCTCGGGCAAGATATACTGCTGCTCAGGCTCTATCACATCCATGGGTTAAAGAAGGAGGAGAGGCATTAGAGATTCCTATTGATATATCTGTCCTGAACAACATGCGACAGTTTGTGAAATATAGTCGGTTGAAACAATTTGCACTAAGGGCATTGGCTAGCACACTTAATGAAGGAGAGTTATCTGATTTAAAAGATCAGTTTGATGCAATAGATGTGGACAAAAATGGTTCTATTAGTCTTGAGGAAATGAGACAGGCTCTTGCTAAAGATCTCCCTTGGAAGTTGAAAGAGTCACGTGTGCTAGAGATTTTGCAAGCGGTTAGTAATTACGATGAAAGAATCACATTTTTTGTAGTTACTTATCATCCCTTTTTTACTTTAAAAGCTTGGAACTCATAA 1410 0.4468 MGMCFSATKVSGSNSNNTSNRNRKCSAAPLETAPAPAQKKQQTSHGQRRRATEDSQKNARAKDKAGARRQGGHVPCGKRTDFGYEKDFDKKFSLGKLLGHGQFGYTYVGIDKVNGDRVAVKRLEKAKMVLPIAVEDVKREVKILKELTGHENVVQFYNAFEDDSYVYIVMELCEGGELLDRILSKKDSRYTEKDAAVVVRQMLKVAAECHLHGLVHRDMKPENFLFKSTREDSPLKATDFGLSDFIKPGKRFQDIVGSAYYVAPEVLKRKSGPESDVWSIGVITYILLCGRRPFWDKTEDGIFKEVLRNKPDFRRKPWPTISNPAKDFVKKLLVKDPRARYTAAQALSHPWVKEGGEALEIPIDISVLNNMRQFVKYSRLKQFALRALASTLNEGELSDLKDQFDAIDVDKNGSISLEEMRQALAKDLPWKLKESRVLEILQAVSNYDERITFFVVTYHPFFTLKAWNS 469
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca06g01263 469 PANTHER CALCIUM-DEPENDENT PROTEIN KINASE 28-LIKE 43 447 - -
Cca06g01263 469 MobiDBLite consensus disorder prediction 46 69 - -
Cca06g01263 469 MobiDBLite consensus disorder prediction 7 26 - -
Cca06g01263 469 ProSitePatterns EF-hand calcium-binding domain. 408 420 IPR018247 -
Cca06g01263 469 SUPERFAMILY EF-hand 378 453 IPR011992 -
Cca06g01263 469 PANTHER SERINE/THREONINE-PROTEIN KINASE 43 447 - -
Cca06g01263 469 SMART efh_1 399 427 IPR002048 GO:0005509
Cca06g01263 469 SMART serkin_6 92 352 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca06g01263 469 MobiDBLite consensus disorder prediction 1 78 - -
Cca06g01263 469 Gene3D Phosphorylase Kinase; domain 1 85 177 - -
Cca06g01263 469 CDD EFh 399 453 IPR002048 GO:0005509
Cca06g01263 469 ProSitePatterns Serine/Threonine protein kinases active-site signature. 214 226 IPR008271 GO:0004672|GO:0006468
Cca06g01263 469 ProSiteProfiles Protein kinase domain profile. 92 352 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca06g01263 469 SUPERFAMILY Protein kinase-like (PK-like) 90 364 IPR011009 -
Cca06g01263 469 ProSiteProfiles EF-hand calcium-binding domain profile. 395 430 IPR002048 GO:0005509
Cca06g01263 469 CDD STKc_CAMK 91 351 - -
Cca06g01263 469 Gene3D - 378 392 - -
Cca06g01263 469 Gene3D - 373 445 - -
Cca06g01263 469 Gene3D Transferase(Phosphotransferase) domain 1 178 372 - -
Cca06g01263 469 ProSitePatterns Protein kinases ATP-binding region signature. 98 121 IPR017441 GO:0005524
Cca06g01263 469 Pfam Protein kinase domain 94 352 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca06g01263 Cca-Chr6 27116438 27122148 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca06g01263 1 444 EF-hand Containing Proteins AT5G66210 75.730 0.0 697
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Cca06g01263 Pkinase 2.5e-68 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca06g01263 K13412 - gmx:100817249 807.749
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca06g01263 06 27116438 27122148 Cca06g01263 06 27116438 27122148 ECH