Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca06g01249 ATGGCAGAAAGCAAAGACGAAATCCATTTTGAAAGTTCTGAATGTTCACCAGCCTCAACCTCGCCAATGGGTGGCAAGCATAGATACTTGTTTCATAGATTATGCAGTTCATGGGACAAAAGCATCAGCCTAAAGGGTCGAAGAATTTTCCATAGGGATGTGGAAAAAGAAGAATTCCAGTATGCCAGTAGTCACTGTCTCACATCTTACTATAGTGTCTTCGTGGTTCGACTAGCAATCATGATCATGCTAGCCATCTTGATAGGGCTGCTCACTATACTGACATGGCATTTCACCAAGATTTACACAACAAAATCACTTAACAGTTTGGCATATGGTTTGCGTTATGAACTTCTGCAACGCCCCGTTTTGAGGATGTGGAATATTTTAAACTCTACTTCTGAAATTACTACAGCTCAGGTCAAACTATCTCAGTATGTGATCAGACGCTACAGCAACCCTGCAAATCAAGCAGAGCAAGTTGAGCAGCTGTATGAAGCTATGAGGGCTATAACATGGTCCTTGTTTGCTAGTCGGAAAGCTCTAAACTCTATAACTATCAATTATAAGAATGGATTTGTTCAGGCATTCCATAGGGATCTGAAAGACAACAACACATTTTACATATACTCTGATCTTGCAAATTACTCAATGGGTGCCAGCAACTCAAATGAGATCAATTCCTTTTCCACACATCAAGCTTGGGATGATAAGGCCCTTCACGGTAACTATTCTGCAATCTGGTACCGTGAACCACTTGATCCAGTGAGTGGTGAAAAGATTGGAAAAGCTATGAAAATTGCACCTGAAGACTTGATCAACATAGCTGGGTTTTCACAAGTACCTGATGGTGTAGCTTCTTGGCACGTTGCAGTGAGCAAGTTTACTGATTCACCGTTGCTTTCAGCAGCATTGCCAGTTTGGGACTCTTCTAATAAGACCATTATGGCAGTTGTGGGGGTCACAACTGCACTTTATAGTGTGGGACAGCTAATGAGAGAGCTAGTCGAGTTGCACAGTGGCCATATGTATTTAACATCACAAGAGGGTTATTTACTTGCAACTTCCACAAGTGCACCTCTACTGGCAAATTCAACAAAGCCTAAGCTTAAGATGGCTGTTGACTGTGAAGATGATGTAATACGACACGGAGCTGAGTGGTTACAGAGAACTTATGGGAACAATTTTCCTCCAAGTCATGAGGTTCATGTAGAGAATGTCAAGCTAGGCCACCAGAGATATTACATTGACTCATTTTTCCTAAAATTGAAGAGACTTCCTTTGGTAGGTGTGATCATCATACCAAGAAAGTATATCATGGGGCAGGTAGATGAAAGAGCCTTCAAAACGTTGGTTATTCTGATATCTGCATCGTTATGTATTTTGGTCATTGGATGTGTTTGCATTTTGATATTGACAAACGGAGTTTCAAAGGAAATGAATCTAAGAGCAGAACTGATAAATCAACTGGAAGCAAGAAGAAAAGCAGAAGCATCAAGCAACTATAAAAGTCAATTCCTAGCAAACATGAGTCATGAACTTAGGACACCTATGGCAGCAGTAATTGGATTGCTTGACATTCTTATATCTGATGATTGTCTCACAAATGAACAATATTCAACCGTTACTCAAATAAGAAAATGCTCAACTGCTCTGCTCCGTCTACTTAATAACATCTTGGATCTGAGTAAGGTGGAATCTGGAAAACTAGTCCTGGAAGATGCAGAATTTGACTTGGGAAGGGAACTTGAAGGGCTTGTAGATATGTTTTCTGTTCAGTGCATTAACCACAATGTGGAGACTGTTTTAGACCTGTCTGATGATATGCCAAAGGTAGTTCGCGGTGATTCTGCAAGGGTGGTTCAAATATTTGCAAATCTGATCAACAATTCAATAAAGTTTACTCCATCGGGTCATATTATTCTGCGAGGATGGTGTGGAAATCGAAATTCTTCCGTTGGTAGTCCAAATTTTCATCTTGACCAGAAGAAATCACGGAGTTTACAAAAGTGCAGAGAGAAGCCAAATGCAAACCATTCAAAGAAAACATCTTTAAAAGATAATAAAGTGATACTTTGGTTTGAAGTTGATGACACAGGCTGTGGTATTGACCCAAGCAAATGGGATTCTGTGTTTGAAAGCTTTGAGCAAGCTGATCCATCAACTACAAGACTGCATGGAGGCACTGGTCTTGGACTTTGCATTGTAAGAAACTTGGTTAACAAGATGGGTGGAGACATCAAAGTTGTCAAAAAGGAGGGTCCAGGAACACTGATGCGATTATGCTTGATACTCAGTGCGCCCATGGATGTCATAGAACAACAGTGTGCAGTAGATTTGACAGAAAATGGCTTAGTGGTACTGCTTGCACAGCAAGGAAACATGGGTCGATTAATTACATCGAAGTGGCTACAGAAAAACGGGGTGTGCACAATGGAAGCATCTGATTGGAACGGACTAACTCAAGTTTTGAGGGAACTCTTTCATGCAAGAAGTTCAGTCCATAATACTGACTTTGATGCACACTATCCAGCAAAAGAGGAATTGAAGTCTAAACTACTCAATATACGAGATATGAGGAACCCGGTTTTTGTCATTGTTGTTGACATGGGACTCCTTGACTTGAGCACAGATATATGGAAGGAGCAGCTTAACTTTCTTCACAGGTACTTTGGTAGAGCAAAGTTTGTATGGGTGCTAAATCATGACACCTCCAATACCATAAAGATGGAGATTCGTAGGAAAGGGCATGTACTGATGGTCAACAAACCCCTGTACAAAGCAAAAATGATTCATATTTTGGATGCTGTCATAAAGGAGAGAAATCTTGAGTTACAGAGGAAGAACATGACTGCTCCAAGAATGAAAGAGGGCGATTTGCATGAGTTTCTTGAGATAGATTCTACTCACTTTGAAGCTGCTAGCTCTGATGATTCTGACATATCTGAAGTAGGTGGTTCTAATCATGTTAGTGCTGATGGAGATAAACCAGTTGAAAAGGTAGCCAAATCCCATCCATCATCACCATACCATATGAATAACTCCCTAGTCAATGAAAATGAATATTTGGAAGAACATAATATGGGGAAGGAAGAATCTTCTAGTCCAAGCTCCAGTTATGGAACCGAAGACAACCAACCTAAATCACAGTCCACCAAAGAATCATCCATTTCAACCGAAGATCAGGATGAAGATTCTGAATGTGGAGAAACACAAAGGGTTACCAGCTCAAGTAAAGCAGTAGATGGAAAGAAATCTCTTGAAGGACTAAAGATATTGCTTGCAGAAGATACACCGGTGCTTCAAAGGGTTGCAACCATAATGCTTGAAAAAATGGGAGCAGCTGTTGTTGCTGTAGGTGATGGACAACAGGCAGTAGAAGCTCTTGGTTGCATGTTCCCTGCTGAAGATCGTAGAAGGGAATCACTCCAGAAGGGAATCACTCCATATGACTTGATCCTAATGGATTGTCAGATGCCAAAGATGGATGGGTACGAGGCAACAAAAGCAATAAGGAAATCAGAAGTGGGAACAGGCTTGCACATTCCCATTGTTGCTCTTACAGCACATGCAATGTCATGTGATGAAGCAAAATGCCTGGAGGTGGGCATGGATGCTTACTTAACAAAGCCAATTGACTTCAAAATGATGGTGTCCACCATTCTTTCACTCACCAAAAGAACATCTTGA 3690 0.4089 MAESKDEIHFESSECSPASTSPMGGKHRYLFHRLCSSWDKSISLKGRRIFHRDVEKEEFQYASSHCLTSYYSVFVVRLAIMIMLAILIGLLTILTWHFTKIYTTKSLNSLAYGLRYELLQRPVLRMWNILNSTSEITTAQVKLSQYVIRRYSNPANQAEQVEQLYEAMRAITWSLFASRKALNSITINYKNGFVQAFHRDLKDNNTFYIYSDLANYSMGASNSNEINSFSTHQAWDDKALHGNYSAIWYREPLDPVSGEKIGKAMKIAPEDLINIAGFSQVPDGVASWHVAVSKFTDSPLLSAALPVWDSSNKTIMAVVGVTTALYSVGQLMRELVELHSGHMYLTSQEGYLLATSTSAPLLANSTKPKLKMAVDCEDDVIRHGAEWLQRTYGNNFPPSHEVHVENVKLGHQRYYIDSFFLKLKRLPLVGVIIIPRKYIMGQVDERAFKTLVILISASLCILVIGCVCILILTNGVSKEMNLRAELINQLEARRKAEASSNYKSQFLANMSHELRTPMAAVIGLLDILISDDCLTNEQYSTVTQIRKCSTALLRLLNNILDLSKVESGKLVLEDAEFDLGRELEGLVDMFSVQCINHNVETVLDLSDDMPKVVRGDSARVVQIFANLINNSIKFTPSGHIILRGWCGNRNSSVGSPNFHLDQKKSRSLQKCREKPNANHSKKTSLKDNKVILWFEVDDTGCGIDPSKWDSVFESFEQADPSTTRLHGGTGLGLCIVRNLVNKMGGDIKVVKKEGPGTLMRLCLILSAPMDVIEQQCAVDLTENGLVVLLAQQGNMGRLITSKWLQKNGVCTMEASDWNGLTQVLRELFHARSSVHNTDFDAHYPAKEELKSKLLNIRDMRNPVFVIVVDMGLLDLSTDIWKEQLNFLHRYFGRAKFVWVLNHDTSNTIKMEIRRKGHVLMVNKPLYKAKMIHILDAVIKERNLELQRKNMTAPRMKEGDLHEFLEIDSTHFEAASSDDSDISEVGGSNHVSADGDKPVEKVAKSHPSSPYHMNNSLVNENEYLEEHNMGKEESSSPSSSYGTEDNQPKSQSTKESSISTEDQDEDSECGETQRVTSSSKAVDGKKSLEGLKILLAEDTPVLQRVATIMLEKMGAAVVAVGDGQQAVEALGCMFPAEDRRRESLQKGITPYDLILMDCQMPKMDGYEATKAIRKSEVGTGLHIPIVALTAHAMSCDEAKCLEVGMDAYLTKPIDFKMMVSTILSLTKRTS 1229
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca06g01249 1229 SUPERFAMILY CheY-like 1088 1226 IPR011006 -
Cca06g01249 1229 PRINTS Bacterial sensor protein C-terminal signature 692 706 IPR004358 GO:0016310|GO:0016772
Cca06g01249 1229 PRINTS Bacterial sensor protein C-terminal signature 710 720 IPR004358 GO:0016310|GO:0016772
Cca06g01249 1229 PRINTS Bacterial sensor protein C-terminal signature 727 745 IPR004358 GO:0016310|GO:0016772
Cca06g01249 1229 Pfam Response regulator receiver domain 1092 1220 IPR001789 GO:0000160
Cca06g01249 1229 SMART HisKA_10 502 568 IPR003661 GO:0000155|GO:0007165
Cca06g01249 1229 Pfam His Kinase A (phospho-acceptor) domain 503 568 IPR003661 GO:0000155|GO:0007165
Cca06g01249 1229 MobiDBLite consensus disorder prediction 656 682 - -
Cca06g01249 1229 SMART HKATPase_4 615 767 IPR003594 -
Cca06g01249 1229 MobiDBLite consensus disorder prediction 974 1081 - -
Cca06g01249 1229 SUPERFAMILY Homodimeric domain of signal transducing histidine kinase 490 569 IPR036097 GO:0000155|GO:0007165
Cca06g01249 1229 CDD HisKA 503 564 IPR003661 GO:0000155|GO:0007165
Cca06g01249 1229 Gene3D - 1069 1227 - -
Cca06g01249 1229 CDD REC_hyHK_CKI1_RcsC-like 1092 1221 - -
Cca06g01249 1229 PANTHER TWO-COMPONENT HISTIDINE KINASE 25 1226 - -
Cca06g01249 1229 MobiDBLite consensus disorder prediction 1 22 - -
Cca06g01249 1229 PANTHER OSMOSENSOR HISTIDINE KINASE 25 1226 - -
Cca06g01249 1229 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 557 763 IPR036890 -
Cca06g01249 1229 SMART REC_2 1090 1221 IPR001789 GO:0000160
Cca06g01249 1229 Gene3D - 490 569 - -
Cca06g01249 1229 ProSiteProfiles Response regulatory domain profile. 1091 1225 IPR001789 GO:0000160
Cca06g01249 1229 MobiDBLite consensus disorder prediction 1007 1021 - -
Cca06g01249 1229 ProSiteProfiles Histidine kinase domain profile. 509 767 IPR005467 -
Cca06g01249 1229 Gene3D - 570 767 IPR036890 -
Cca06g01249 1229 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 615 763 IPR003594 -
Cca06g01249 1229 MobiDBLite consensus disorder prediction 1032 1056 - -
Cca06g01249 1229 MobiDBLite consensus disorder prediction 663 682 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca06g01249 Cca-Chr6 26961872 26970418 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca06g01249 21 1226 Histidine Kinase Gene Family AT2G17820 64.696 0.0 1568
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Cca06g01249 HATPase_c 2.4e-22 CL0025
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca06g01249 - - gmx:100807543 2155.18
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca06g01249 06 26961872 26970418 Cca06g01249 06 26961872 26970418 ECH