Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca06g01234 ATGAGTCTCAAAGGCTTTGTATCAATTGTCATCAATTTAATTGGTCTAGCAGAGGAACCAAGGAACAATAATGACGTCCCTTTACCTTACATGCTGCCACAAAACAAGAAGCAGCAATCATCTGAATCTGCAGCAGAATCATCCAATTTTGTGGAGAATAATAGTGAGGATTGTTGGTGTTGTGTGTGCTTGTCGAGGCTAAAGGCCAAAGATGAAATCCGTGTGCTTCCTTGCTCTCACAAGTTCCATAAGATTTGTGTAAATAGATGGCTTAAGGGTCACCACAAAACGTGTCCACTGTGCCGTTTCTCAATGGGAGCAGAGGAGAAGTCTCATCGTGCAGAAATGTTCACTGAAGAAATGTTAATATGGTTTTCTTCTTTCCATGTAGCTGGTATGTAA 402 0.4104 MSLKGFVSIVINLIGLAEEPRNNNDVPLPYMLPQNKKQQSSESAAESSNFVENNSEDCWCCVCLSRLKAKDEIRVLPCSHKFHKICVNRWLKGHHKTCPLCRFSMGAEEKSHRAEMFTEEMLIWFSSFHVAGM 133
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca06g01234 133 CDD mRING-H2-C3H2C2D_ZSWM2 60 102 - -
Cca06g01234 133 PANTHER GB|AAF27103.1 7 118 - -
Cca06g01234 133 SMART ring_2 60 101 IPR001841 -
Cca06g01234 133 Pfam Ring finger domain 60 102 IPR001841 -
Cca06g01234 133 ProSiteProfiles Zinc finger RING-type profile. 60 102 IPR001841 -
Cca06g01234 133 MobiDBLite consensus disorder prediction 33 49 - -
Cca06g01234 133 MobiDBLite consensus disorder prediction 27 49 - -
Cca06g01234 133 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 29 107 IPR013083 -
Cca06g01234 133 SUPERFAMILY RING/U-box 54 106 - -
Cca06g01234 133 PANTHER TARGET OF ERK KINASE MPK-1 7 118 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca06g01234 Cca-Chr6 26826412 26827005 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca06g01234 54 106 C3H Transcription Factor Family AT1G80400 49.057 3.53e-13 63.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca06g01234 - - gmx:100809233 207.223