Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca06g01228 ATGGAGTTTGTGCCAAATCCGTGTCCTTTGCGTTCATCTTCCTTCGTGAATCTCGTTGAGAGGGTTAAACAGCTTGGTACCCTTGCCGTTTCTGCTGTCATTGGGAACATTTTCTCCGCGATCTTGACCTTTTGCTTCGCGTTAGTGGGCACTTTGTTGGGGGCTTTGACAGGAGCTTTGATAGGCCAAGAAACTGAGAGTGGCTTCATTCGAGGGGCTGCGGTTGGTGCCATATCAGGAGCTGTTTTTTCCATTGAAGTGTTCGAATCCTCTCTTGTTCTATGGCAATCTGATGAATCTGGGATTGGTTGTGTCTTATACTTGATTGATGTTATTGCCAGCTTACTGAGTGGGAGACTTGTGCGCGAGAGGATAGGTCCAGCCATGTTGAGTGCTGTTCAGAGTCAGGTAGTTTGCTTTGCACAACGGCTTTTTGCAATGATGACACTGAAATTTTCTTATGCACTTCCTGTACTGGCTGACACTTTTGCTCTTGCTTATCAGATGGGTGCTGTTGAAAACAGCTTTGATGAGGTTCAAAACATCTTTGACACCGGTGGTGCCAAAGGTTTGTCTGGAGATTTGGTTGAAAAAATCCCAAAAATCAAAATTACAACTGACAACAATGTTGATGCATCTGGGGATAGAGTTTCTTGTTCAGTTTGCCTGCAGGACTTTCAGCTTGGAGAGACAGTGAGAAGCTTACCTCATTGCCATCACATGTTTCACCTACCTTGCATAGATAAGTGGCTATTCAGACATGGTTCTTGCCCATTGTGCAGAAGGGATCTGTAA 795 0.4491 MEFVPNPCPLRSSSFVNLVERVKQLGTLAVSAVIGNIFSAILTFCFALVGTLLGALTGALIGQETESGFIRGAAVGAISGAVFSIEVFESSLVLWQSDESGIGCVLYLIDVIASLLSGRLVRERIGPAMLSAVQSQVVCFAQRLFAMMTLKFSYALPVLADTFALAYQMGAVENSFDEVQNIFDTGGAKGLSGDLVEKIPKIKITTDNNVDASGDRVSCSVCLQDFQLGETVRSLPHCHHMFHLPCIDKWLFRHGSCPLCRRDL 264
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca06g01228 264 SMART ring_2 219 260 IPR001841 -
Cca06g01228 264 Pfam Ring finger domain 218 261 IPR001841 -
Cca06g01228 264 ProSiteProfiles Zinc finger RING-type profile. 219 261 IPR001841 -
Cca06g01228 264 PANTHER NEP1-INTERACTING PROTEIN-LIKE 2 164 264 IPR044523 -
Cca06g01228 264 PANTHER NEP1-INTERACTING PROTEIN-LIKE 2 11 138 IPR044523 -
Cca06g01228 264 Pfam YMGG-like Gly-zipper 46 81 IPR027367 -
Cca06g01228 264 SUPERFAMILY RING/U-box 208 264 - -
Cca06g01228 264 CDD RING-H2_PA-TM-RING 219 261 - -
Cca06g01228 264 PANTHER NEP1-INTERACTING PROTEIN-LIKE 1 164 264 - -
Cca06g01228 264 PANTHER NEP1-INTERACTING PROTEIN-LIKE 1 11 138 - -
Cca06g01228 264 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 180 264 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca06g01228 Cca-Chr6 26744409 26746534 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca06g01228 12 264 C3H Transcription Factor Family AT5G66070 66.798 5.17e-113 322
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca06g01228 - - ccaj:109800586 514.227