Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca06g01220 ATGGCGGACTCCACCGGCGACGACAATGGCGTAATCTACCTCCACGGCGACCTCGACCTCAAAATCATCGAGGCTCGCCACTTGCCGAACATGGACATCTTCTCCGAGCGCCTCCGCCGCTGCGTGACCGCCTGCGACACTATCAAATTCCACTCCGACCACGCCGACGACTCCGGCAGCCAGCGCTCGCGGACTCACCGCCACCGGAGGATCATCACCAGCGACCCCTACGTCACCGTCTCCGTGCCGCAAGCCACGGTGGCGCGCACGCGCGTGCTCAAGAACTCGCCCAACCCTTACTGGGACGAGCGCTTCCACATCCCGCTCGCGCATCCCCTCGTGGATTTGGAATTCCGCGTCAAGGACGACGACGTTTTCGGCGCGCAGATCATGGGGACCGTGAAGATTCCGGCGCGGCGGATCGCCGCCGGGGAGAAGATCTCCGGCTGGTTCCCGATCCTCGGCGCCTCCGGCAAGCCGCCGAAGCCGGACACCGCGCTGCACATCGAGATGACGTTCACGCCGGTGACGGAGAACGAGCTCTACCGGCGCGGCATTGCGGCGGATCCCGAGCACGGCGGCGTGCGGCACACGTATTTTCCGGTGAGGAAGGGGAGTTCGGTGCGGCTGTACCAGGACGCGCACTGTCCCGATTCCGGCGAGGGGAAGTTGCCGGAGATTGAGCTTGACGGTGGAAGGGTTTACAGGCATGAGAAGTGTTGGGAGGATATTTGCTACGCTATTTCCGAGGCTCATCACATGGTGTATTTGGTGGGTTGGTCGATTTACCACAAGGTGAGGCTTGTTAGAGAGGCTACTAGGGAATTGCCTCGAGGTGGCGATTTGACTCTTGGTGAGTTGCTTAAGTATAAGTCTGAAGAAGGTGTGAGAGTGTTGTTGCTGGTTTGGGATGACAAGACTTCGCATGATAAGGTTTTCTTGAAGACGACTGGAGTGATGCAGACTCATGATGAGGAAACCAGGAAGTTTTTTAAGCATTCTTCTGTAATGTGTGTTCTGGCGCCTCGGTATGCTAGCAGCAAGATGAGCTTCTTGAAGCAACAGGCAAGTGTTGTTGGGACAGTCTTCACACACCACCAGAAATGTGTGATTGTGGACACACAGGCTGCTGGTAATAATCGAAAGATAACTGCTTTTATAGGAGGTCTTGATCTATGTGATGGCCGGTATGACACACCTGAGCATCGTCTGTTTCGTGATCTTGACACTGTATTTTCTGGTGATTTCCACAATCCTACATTTGCTGCTGGAACAAGGGTTCCTAGACAACCATGGCATGATTTACACTGCAGAATAGATGGACCTGCTGCATTTGATGTTCTCATTAATTTTGAGCAGCGGTGGAGAAAAGCAACTAAGTGGAAAGAGTTTGCAATCCTTTTCAAAAAATCCTCTCAATGGCATGATGATGCTTTAATAAGAATAGAACGCATCTCATGGATATTAAGTCCTCGCACTTCTACATCAAAGGATAATTATACTGTTGTTCCAGAGGATGACCCTTCAGTAAGGGTTTCTGATGAAGATGATCCTGAAAACTGGCATGTTCAGATCTTCCGCTCCATTGACTCAGGATCCTTGAAAGGATTTCCCAAACGTGTTGATGTTGCTCTTTCTCAGAATCTTATCTGTGCTAAAAGTTTGGTTATAGACAAAAGCATTCAAACTGCATACATCCAAGCGATCAGATCTGCTCAACACTTTATTTATATTGAAAACCAATACTTCATTGGATCTTCCTATGCTTGGCCATCTTATAAAGATGCAGGGGCTGATAATCTCATTCCAATGGAGTTGGCACTGAAAATTGCTAGTAAAATCAGAGCTAAGGAGAGATTTGCTGTCTATATTGTTTTACCAATGTGGCCAGAAGGTGATCCTAAAACTGGGGCCATGCAAGAAATCCTCTTTTGGCAGGGCCAGACGATGCAAATGATGTATGATGTTGTTGCTAGAGAATTGAAATCAATGCAACTTACTGATGTGCACCCACAAGATTACCTCAATTTTTATTGCCTTGGTAATCGGGAACACTTTAATGAAGAAAGTTCAGGCACGAATGGTGCACAGGTCTCAGGAGCATATAAATATCGCCGATTTATGATTTATGTGCATGCTAAGGGGATGATCGTTGATGATGAGTATGTTATAATTGGATCTGCTAATATAAACCAAAGATCTATGGCTGGTACTAAAGATACTGAGATAGCTATGGGTGCATATCAACCCCATTACACATGGTCAACAAAGAAAAGACATCCACGTGGCCAGATTTATGGTTACAGAATGTCCCTTTGGGCAGAGCATCTTGACATGGTAGATGAAATTTTTGAGGAACCCGAGACATTGGAATGTGTGCATAAAGTGAATACAATTGCAGACAATAATTGGAAATTGTTTGCATCTGAAGATTTCTCACTTCTGCAAGGACATCTTCTCAAGTATCCTGTACAGGTAGATTCCGATGGGAAGATTAGATCCCTACCTGAATGTGAGAATTTCCCCGATGCTGGCGGGTCAATTCGTTTAAGCGATTGGACTCGACAAAAACCCTTACCCTGGGTCGTTTTATTCTTGATTCTCCATCTCCGTTACAAAGTCAACACTCGAAGATCGTCGCTCGTGGAAATGGCCGATTCTCCGCCGAGAAGGAATTCAAGGTCCCCTTCTCCGTGGAGGGAGCAgtcaaggtccaggtcacggtctaggcataggtctaggtccaggtcaagatctTTTGAAAAGCAAAGACCAAGATCCCGTTCCAGAAGTCATGGCAGATCAAGATCAAGAAGCAACGAAAGGTCTGAGTCTAGAAATGGTGGGATTACACTTTATGTGACTGGCCTATCTTCAAGGGTCACTGAGAGAGACCTAGAGGAGCATTTCTCTAAGGAGGGAAAGGTTGCTTCATGTTTTCTTGTGGTGGAGCCTCGGACACGAATTTCTCGTGGTTTTGCTTTTATTACAATGGATACTGTCGAGGATGCAAACCGCTGCATCAAATATCTCAATCAATCAGTTTTAGAGGGACGCTACATCACTGTTGAGCGGTCAAGAAGAAAGCGACCAAGAACTCCTACACCCGGACACTATCTTGGTCTGAAAAGTACTAGAGACTACGGATATCGTGGCGACCGTGGAAGGTATCGAGGAGGTGGATCTGGTCGTGATGATTATGGATACCGTAGGTCTCCACCAAGGCGCTCACCATATCGAGGTGGTAGAGATTATTCACCAAGGCACTCACCTTATGGTGGACGGTCTAGGAGAGAGAGGTCGAGGTCAATTCCTTATTCTCCATATGGTAGCCCAGATAGAAGGTATGCTCGTGGATCTAGGTGA 3366 0.4727 MADSTGDDNGVIYLHGDLDLKIIEARHLPNMDIFSERLRRCVTACDTIKFHSDHADDSGSQRSRTHRHRRIITSDPYVTVSVPQATVARTRVLKNSPNPYWDERFHIPLAHPLVDLEFRVKDDDVFGAQIMGTVKIPARRIAAGEKISGWFPILGASGKPPKPDTALHIEMTFTPVTENELYRRGIAADPEHGGVRHTYFPVRKGSSVRLYQDAHCPDSGEGKLPEIELDGGRVYRHEKCWEDICYAISEAHHMVYLVGWSIYHKVRLVREATRELPRGGDLTLGELLKYKSEEGVRVLLLVWDDKTSHDKVFLKTTGVMQTHDEETRKFFKHSSVMCVLAPRYASSKMSFLKQQASVVGTVFTHHQKCVIVDTQAAGNNRKITAFIGGLDLCDGRYDTPEHRLFRDLDTVFSGDFHNPTFAAGTRVPRQPWHDLHCRIDGPAAFDVLINFEQRWRKATKWKEFAILFKKSSQWHDDALIRIERISWILSPRTSTSKDNYTVVPEDDPSVRVSDEDDPENWHVQIFRSIDSGSLKGFPKRVDVALSQNLICAKSLVIDKSIQTAYIQAIRSAQHFIYIENQYFIGSSYAWPSYKDAGADNLIPMELALKIASKIRAKERFAVYIVLPMWPEGDPKTGAMQEILFWQGQTMQMMYDVVARELKSMQLTDVHPQDYLNFYCLGNREHFNEESSGTNGAQVSGAYKYRRFMIYVHAKGMIVDDEYVIIGSANINQRSMAGTKDTEIAMGAYQPHYTWSTKKRHPRGQIYGYRMSLWAEHLDMVDEIFEEPETLECVHKVNTIADNNWKLFASEDFSLLQGHLLKYPVQVDSDGKIRSLPECENFPDAGGSIRLSDWTRQKPLPWVVLFLILHLRYKVNTRRSSLVEMADSPPRRNSRSPSPWREQSRSRSRSRHRSRSRSRSFEKQRPRSRSRSHGRSRSRSNERSESRNGGITLYVTGLSSRVTERDLEEHFSKEGKVASCFLVVEPRTRISRGFAFITMDTVEDANRCIKYLNQSVLEGRYITVERSRRKRPRTPTPGHYLGLKSTRDYGYRGDRGRYRGGGSGRDDYGYRRSPPRRSPYRGGRDYSPRHSPYGGRSRRERSRSIPYSPYGSPDRRYARGSR 1121
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca06g01220 1121 MobiDBLite consensus disorder prediction 905 919 - -
Cca06g01220 1121 CDD C2_plant_PLD 10 174 - -
Cca06g01220 1121 Gene3D - 887 1035 IPR012677 -
Cca06g01220 1121 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 950 1028 IPR000504 GO:0003723
Cca06g01220 1121 MobiDBLite consensus disorder prediction 1047 1083 - -
Cca06g01220 1121 SMART C2_3c 17 150 IPR000008 -
Cca06g01220 1121 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 14 176 IPR035892 -
Cca06g01220 1121 Pfam C2 domain 16 153 IPR000008 -
Cca06g01220 1121 SUPERFAMILY Phospholipase D/nuclease 199 469 - -
Cca06g01220 1121 SMART pld_4 361 396 IPR001736 GO:0003824
Cca06g01220 1121 SMART pld_4 707 734 IPR001736 GO:0003824
Cca06g01220 1121 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 361 396 IPR001736 GO:0003824
Cca06g01220 1121 Pfam Phospholipase D Active site motif 361 396 IPR001736 GO:0003824
Cca06g01220 1121 CDD RRM_RBMX_like 949 1028 - -
Cca06g01220 1121 SMART rrm1_1 951 1024 IPR000504 GO:0003723
Cca06g01220 1121 SUPERFAMILY Phospholipase D/nuclease 558 790 - -
Cca06g01220 1121 MobiDBLite consensus disorder prediction 882 951 - -
Cca06g01220 1121 Gene3D Endonuclease Chain A 229 480 - -
Cca06g01220 1121 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 952 1021 IPR000504 GO:0003723
Cca06g01220 1121 Gene3D C2 domain 15 184 IPR035892 -
Cca06g01220 1121 PANTHER PHOSPHOLIPASE D DELTA 10 848 - -
Cca06g01220 1121 Pfam PLD-like domain 566 744 IPR025202 -
Cca06g01220 1121 Pfam Phospholipase D C terminal 781 848 IPR024632 -
Cca06g01220 1121 PANTHER PHOSPHOLIPASE D 10 848 IPR015679 -
Cca06g01220 1121 ProSiteProfiles C2 domain profile. 1 151 IPR000008 -
Cca06g01220 1121 MobiDBLite consensus disorder prediction 1025 1121 - -
Cca06g01220 1121 Gene3D Endonuclease Chain A 529 758 - -
Cca06g01220 1121 SUPERFAMILY RNA-binding domain, RBD 947 1060 IPR035979 GO:0003676
Cca06g01220 1121 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 707 734 IPR001736 GO:0003824
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca06g01220 Cca-Chr6 26635925 26648094 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca06g01220 1 698 Phospholipase D Gene Family (Wang group) AT4G35790 72.262 0.0 1055
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca06g01220 K01115 - gmx:100801787 1569.29