LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Cca06g01219	ATGTTTCATGTTTCTCCCATTGCTTTGCTTAATCCCCAACCTCACATTTTCCACTTCCCTTCTTCCCGCAACctccatcgctcactctctctccatttccccactctcccctccctctcgccaCCGCCGCACTACCACGATTCCGACGAACACGTCATCGGCGACTGCCTCGTTTTCGAGGACGGCGTTTTCGACGACCCCCTTTTCCATAATTCCGACACTCTCTCCGTCAATGAGCCCACATCCAAgcccaagcccaggcccaggcccaggcccaggcccagTTGGAAGAAAAAAGTGGAGGTGACTGGGGGCGAGAATTTGGTTCCGGACAAGTGGCGAGAGATTCAGGCAGAGATAAACATCACGAAGAGGGAGAGGCGCAAGATAGCGAGGGAAATCGAGTTCAACAGAACCGTTGATAAGAAGAGAAGAGGCTTGATTCCTCTTAGGGATATGAACTTAGATGACTACAAGGCTTTTAAGGAGGCCAAATTGGCGCAGATGAAACTTCTCCCTCACGCTTCTACTTTTATCCAGAACCAAGAGGTACCTGAGACTCAACCTCAATTGAACCATGGTGAAGTGGTTCCTTGGGTTGAACCTGAATTGAACGGCGGTGAACGTGTAGAGCCCAAGAATCCAAGGTGGGCTGTGTATGGAAGGGGTTTGGAGGATGTCACTGAGTTTTTCAATAGTGACAACTATGACCCTTCTTCTAACACTCCTCAGGGTAAGCGGAAGTTGTTTACTAAGGAGGAGAAGGTTTTGATGAATAAGCGAGTGCCGGACTTGGAAGTTGCTACTTCAGATAAATGGCTTCCTCTGCACACTCTTGCTGCATGTGGAGAATTTTACCTTTTAGATTCTCTGTTGAAGCATAATGTTGATATCAATGCTGTGGATACGGATGGTTTGACTGCCCTTCACAGAGCAATAATTGGAAAAAAGCAGGCCATAACCAATTATCTCCTGAGAAACTCAGCTAATCCCTTTGTACAGGATAAAGAGGGAGCCACATTGATGCACTATGCTGTACTAACAGCTTCTACCCAGACAATTAAACTACTCTTACTATATAACGTGGATATAAATCTCCAGGACAATAATGGTTGGACACCATTACATCTTGCTGTTCAGGCTCAGAGAACAGATTTAGTGAAGCTTCTGCTGATTAAAGGTGCTGACAAGACATTAAGAAACAAAGATGGATTAACTGCACTCGAGCTTTGCCTTTACTATGGTCAAAGTGCCAGAACATATGAGCTAATCAAGTTGTTTAAGAAGCCTCAAAGAAGTCTTAGATTTGTATCAGTATGA	1320	0.4152	MFHVSPIALLNPQPHIFHFPSSRNLHRSLSLHFPTLPSLSPPPHYHDSDEHVIGDCLVFEDGVFDDPLFHNSDTLSVNEPTSKPKPRPRPRPRPSWKKKVEVTGGENLVPDKWREIQAEINITKRERRKIAREIEFNRTVDKKRRGLIPLRDMNLDDYKAFKEAKLAQMKLLPHASTFIQNQEVPETQPQLNHGEVVPWVEPELNGGERVEPKNPRWAVYGRGLEDVTEFFNSDNYDPSSNTPQGKRKLFTKEEKVLMNKRVPDLEVATSDKWLPLHTLAACGEFYLLDSLLKHNVDINAVDTDGLTALHRAIIGKKQAITNYLLRNSANPFVQDKEGATLMHYAVLTASTQTIKLLLLYNVDINLQDNNGWTPLHLAVQAQRTDLVKLLLIKGADKTLRNKDGLTALELCLYYGQSARTYELIKLFKKPQRSLRFVSV	439

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Cca06g01219	439	SMART	ANK_2a	271	300	IPR002110	GO:0005515
	Cca06g01219	439	SMART	ANK_2a	370	399	IPR002110	GO:0005515
	Cca06g01219	439	SMART	ANK_2a	337	366	IPR002110	GO:0005515
	Cca06g01219	439	SMART	ANK_2a	304	333	IPR002110	GO:0005515
	Cca06g01219	439	SMART	ANK_2a	403	432	IPR002110	GO:0005515
	Cca06g01219	439	ProSiteProfiles	Ankyrin repeat region circular profile.	370	402	-	-
	Cca06g01219	439	ProSiteProfiles	Ankyrin repeat profile.	304	336	IPR002110	GO:0005515
	Cca06g01219	439	Pfam	Ankyrin repeats (3 copies)	319	401	IPR002110	GO:0005515
	Cca06g01219	439	PANTHER	ANKYRIN REPEAT DOMAIN-CONTAINING PROTEIN, CHLOROPLASTIC-LIKE	14	431	-	-
	Cca06g01219	439	ProSiteProfiles	Ankyrin repeat profile.	271	303	IPR002110	GO:0005515
	Cca06g01219	439	MobiDBLite	consensus disorder prediction	70	100	-	-
	Cca06g01219	439	SUPERFAMILY	Ankyrin repeat	263	420	IPR036770	-
	Cca06g01219	439	ProSiteProfiles	Ankyrin repeat profile.	337	369	IPR002110	GO:0005515
	Cca06g01219	439	ProSiteProfiles	Ankyrin repeat region circular profile.	337	369	-	-
	Cca06g01219	439	Pfam	Ankyrin repeats (many copies)	275	317	IPR002110	GO:0005515
	Cca06g01219	439	Gene3D	-	240	342	IPR036770	-
	Cca06g01219	439	PANTHER	ANKYRIN REPEAT, PH AND SEC7 DOMAIN CONTAINING PROTEIN SECG-RELATED	14	431	-	-
	Cca06g01219	439	ProSiteProfiles	Ankyrin repeat profile.	370	402	IPR002110	GO:0005515
	Cca06g01219	439	Gene3D	-	343	433	IPR036770	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Cca06g01219	Cca-Chr6	26630172	26633457	Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Cca06g01219	324	412	Ion Channels	AT2G25600	32.609	3.72e-06	47.4

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Cca06g01219	-		-	gmx:100815562	661.759