Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca06g01216 ATGGTGATCGAGCACGACATTGAGAGCTGCGGGAGCAGGGCGGTGCAGTCGTCGCACGCTAACCCTCGCCACCACCAGCAGAAGCTGGAGGTGTACAATGAGGTGCTGCGGCGGATTCAGGACTCCGATTGCGAGGAGGCGCACGTTCCCGGCTTCGACGATCAGCTTTGGCTTCACTTCAATCGTCTTCCCGCTAGGTACGCGTTGGATGTGAATGTGGAGAGGGCGGAAGATGTTCTAGCTCATAAGAAATTGCTCAAGTTGGCGGAGGACCCTGCTACTCGACCAGCATTTCAAGTTCGCTTGGTGCAGGTATATCCTTTTGGTGGTGCAAATTATGTTGATTCCATGCATTCAGATCCTTCTGAGAAAGAAGATGCACAAAGTTCTTTTAACTATTCTTTAAAACAGGGGATTCATCCACCACCTACATTTGGTTCATCCTCTAATCTTGAAGCTCTTGCACTTCAAACAACTAAAAATAGCATTGAAGATGGGCGAAGTGCTATGAGTGTGACACCATATTTTCACCGGCCAATGCACGAGATTACCTTTTCAACAATTGACAAGCCTAAACTCCTTAGTCAGTTAACTTCAATACTTGGTGAGATGGGACTGAATATTCAAGAAGCTCATGCATTTTCCACCACGGATGGATTTTCTCTGGATGTCTTTGTCGTTGAGGGATGGCCTAATGAGGAAACTGAGGAGCTCAAAGGTGTGTTGGAAAAGGAAATTTTAAAGGTTAAGGACCAATGCATGTCAAATCAGGGCATGCATTATGCTGCCAATGAACAATACCAGGCAAGGGTGGAACCCTCCCCTCATTTCATTCAAATACCATCTGATGGAGCTGATGTCTGGGAAATTGATACCAATCAGCTGAAATATGAAAACAAAGTTGGCTCTGGGTCATTTGGTGACTTGTACAGAGGCACATATTGCAGTCAAGATGTGGCTATTAAAGTTCTTAAGCCTGAGCGCATAAGTACAGATATGCTGAGAGAATTTGCACAGGAAGTTTATATCATGAGGAAGATTCGACACAAGAATGTTGTTCAGTTCATTGGCGCGTGTACTAGGCCCCCAAGTCTTTGCATTGTTACTGAGTTTATGTCTAGGGGAAGCTTATATGACTTTCTGCACAAACAAAGAGGTGTATTTAAGCTTCCATCATTGCTAAAAGTAGCAATTGATGTTTCCAAGGGAATGAACTATTTGCACCAAAATAATATAATTCACAGGGACCTCAAGACTGCCAATCTTCTGATGGATGAAAATGAAGTGGTCAAGGTTGCTGATTTTGGGGTTGCCAGAGTGCAAACTCAGTCTGGAGTGATGACAGCTGAAACTGGAACATACCGTTGGATGGCTCCTGAGGTCATTGAACACAAACCATATGACCAGAAGGCAGATGTTTTCAGTTTCGGAATAGCTCTTTGGGAGCTTTTAACTGGAGAACTACCTTACTCTTGCTTGACCCCATTACAAGCAGCAGTTGGCGTGGTGCAGAAGGTTGTTACTCTTGCTCTTTTTGCAAATAATTTCATCGTAAATAATTTTCTTGCCTATGGATGA 1578 0.4417 MVIEHDIESCGSRAVQSSHANPRHHQQKLEVYNEVLRRIQDSDCEEAHVPGFDDQLWLHFNRLPARYALDVNVERAEDVLAHKKLLKLAEDPATRPAFQVRLVQVYPFGGANYVDSMHSDPSEKEDAQSSFNYSLKQGIHPPPTFGSSSNLEALALQTTKNSIEDGRSAMSVTPYFHRPMHEITFSTIDKPKLLSQLTSILGEMGLNIQEAHAFSTTDGFSLDVFVVEGWPNEETEELKGVLEKEILKVKDQCMSNQGMHYAANEQYQARVEPSPHFIQIPSDGADVWEIDTNQLKYENKVGSGSFGDLYRGTYCSQDVAIKVLKPERISTDMLREFAQEVYIMRKIRHKNVVQFIGACTRPPSLCIVTEFMSRGSLYDFLHKQRGVFKLPSLLKVAIDVSKGMNYLHQNNIIHRDLKTANLLMDENEVVKVADFGVARVQTQSGVMTAETGTYRWMAPEVIEHKPYDQKADVFSFGIALWELLTGELPYSCLTPLQAAVGVVQKVVTLALFANNFIVNNFLAYG 525
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca06g01216 525 CDD STKc_MAP3K-like 301 505 - -
Cca06g01216 525 SUPERFAMILY Protein kinase-like (PK-like) 272 508 IPR011009 -
Cca06g01216 525 PANTHER ACT-LIKE TYROSINE KINASE FAMILY PROTEIN 15 507 - -
Cca06g01216 525 ProSitePatterns Protein kinases ATP-binding region signature. 301 322 IPR017441 GO:0005524
Cca06g01216 525 SMART serkin_6 295 522 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca06g01216 525 SUPERFAMILY ACT-like 180 244 IPR045865 -
Cca06g01216 525 ProSiteProfiles Protein kinase domain profile. 295 525 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca06g01216 525 ProSitePatterns Serine/Threonine protein kinases active-site signature. 412 424 IPR008271 GO:0004672|GO:0006468
Cca06g01216 525 Gene3D Phosphorylase Kinase; domain 1 285 373 - -
Cca06g01216 525 ProSiteProfiles ACT domain profile. 182 256 IPR002912 -
Cca06g01216 525 MobiDBLite consensus disorder prediction 1 26 - -
Cca06g01216 525 PRINTS Tyrosine kinase catalytic domain signature 369 382 IPR001245 GO:0004672|GO:0006468
Cca06g01216 525 PRINTS Tyrosine kinase catalytic domain signature 452 462 IPR001245 GO:0004672|GO:0006468
Cca06g01216 525 PRINTS Tyrosine kinase catalytic domain signature 406 424 IPR001245 GO:0004672|GO:0006468
Cca06g01216 525 PRINTS Tyrosine kinase catalytic domain signature 471 493 IPR001245 GO:0004672|GO:0006468
Cca06g01216 525 Pfam Protein tyrosine and serine/threonine kinase 295 497 IPR001245 GO:0004672|GO:0006468
Cca06g01216 525 Gene3D Transferase(Phosphotransferase) domain 1 374 514 - -
Cca06g01216 525 CDD ACT_TyrKc 180 247 - -
Cca06g01216 525 Coils Coil 232 252 - -
Cca06g01216 525 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 15 507 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca06g01216 Cca-Chr6 26566067 26577259 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca06g01216 2 505 MAP Kinase Kinase Kinase AT4G35780 71.457 0.0 722
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL-Pl-4 Cca06g01216 PK_Tyr_Ser-Thr 2.5e-62 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca06g01216 - - gmx:100816767 969.918
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca11g01188 11 29957559 29959037 Cca06g01216 06 26566067 26577259 PCT