Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca06g01199 ATGGATAATATTGGAAAGCAGGAAGATGGTGAAAAGGTGGAAGAAGCAGTGAATGGTGTTAAAAAAGCACAGAACATAACAATAAAAGTAGTGCGTGGTAAGGGTTCAAGAAGAGGCTCATCATGTAGTTTCTGTCAGGCCGATGAATGTGGTGAGGACTTAAGCATGGCCAAGAGTTACAACCGCCGTCACAAGGTTTGCCAACGACATTCTAAGGCCCCTGTCGTTTTAGTTTCTACCATTCGTCAGAGGTTCTGCCAACAATGTAGCAAGTTCCATGAACTTGCAGAGTTTGATGGCAACAGAAGAAGTTGCAGGATAAGATTGGCTGGCCATAATGAACGGAGGAGGAGAAAAGTTCGCGCAGACCATTGCTTAGAAGATGATCAGCTTCAGCCATAG 402 0.4453 MDNIGKQEDGEKVEEAVNGVKKAQNITIKVVRGKGSRRGSSCSFCQADECGEDLSMAKSYNRRHKVCQRHSKAPVVLVSTIRQRFCQQCSKFHELAEFDGNRRSCRIRLAGHNERRRRKVRADHCLEDDQLQP 133
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca06g01199 133 ProSiteProfiles Zinc finger SBP-type profile. 42 119 IPR004333 GO:0003677
Cca06g01199 133 SUPERFAMILY SBT domain 44 120 IPR036893 GO:0003677|GO:0005634
Cca06g01199 133 PANTHER - 6 123 - -
Cca06g01199 133 Gene3D - 35 106 IPR036893 GO:0003677|GO:0005634
Cca06g01199 133 Pfam SBP domain 45 119 IPR004333 GO:0003677
Cca06g01199 133 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 6 123 IPR044817 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca06g01199 Cca-Chr6 26382687 26383501 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca06g01199 40 120 SBP-box Gene Family AT2G33810 61.728 1.26e-31 107
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Cca06g01199 SBP 2e-30 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca06g01199 - - vra:106776693 150.599
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca06g01199 06 26382687 26383501 Cca06g01199 06 26382687 26383501 ECH