Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca06g01194 ATGGCTTCATGTTATATACACGCAGAACGAAGGGAACCGCGTTACTCGTACCGGGTGTCAACTTTTGAGTGGAATCAGAAGAAGTTGATGCATGGTGATGTTTTCAGGTTTACAATTAGGGTTTATCTCAACACCACACCCCCAACACTCTTACTACACTCTCCCTCTCAAACCATAACATGTCGTAGGTTCTTCCAAGAGGGTCAGTTCTTGCAAACACTGTTATCGCGTATTCAATTCTTTATTGAATCTCTTGAGGAAATAGCAGAAGGTGTGATATGTGATGTTCGAGAACTCTTCCATGTTGAAGGTGTTGCTTCTTTTTCTCCTTCTTCAGAGTTTGATCGCCGTGAGATCCCTTTGCGGTTGGAAGTTACCCTCATTGACAATGGCTTGCTTGCGGCCATGGAGGAGTCCGTACAGGGAATGATTCCTGCTTCCAATGAAGTCATTCAAAGGTCGTTGAAGAAATCTAAGGTTACCACACAGGGTGAGTGTTGTCCTATATGCAAGGAGTTAAATGTTGATGATGAATGTTACATGATGCCATGTGATCATGTGTTTCATCTACAATGTATTGTGTCTTGGCTGCAAATTAATCATGTGTGTCCTGTGTGTCGCTACCCTTTACCGATCCTCACAACCTAG 648 0.4321 MASCYIHAERREPRYSYRVSTFEWNQKKLMHGDVFRFTIRVYLNTTPPTLLLHSPSQTITCRRFFQEGQFLQTLLSRIQFFIESLEEIAEGVICDVRELFHVEGVASFSPSSEFDRREIPLRLEVTLIDNGLLAAMEESVQGMIPASNEVIQRSLKKSKVTTQGECCPICKELNVDDECYMMPCDHVFHLQCIVSWLQINHVCPVCRYPLPILTT 215
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca06g01194 215 Pfam Ring finger domain 167 207 IPR001841 -
Cca06g01194 215 PANTHER OS07G0631200 PROTEIN 114 209 - -
Cca06g01194 215 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 134 212 IPR013083 -
Cca06g01194 215 SUPERFAMILY RING/U-box 160 213 - -
Cca06g01194 215 SMART ring_2 167 206 IPR001841 -
Cca06g01194 215 ProSiteProfiles Zinc finger RING-type profile. 167 207 IPR001841 -
Cca06g01194 215 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 114 209 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca06g01194 Cca-Chr6 26337467 26338206 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca06g01194 128 211 C3H Transcription Factor Family AT1G18760 32.955 2.21e-12 62.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca06g01194 - - ccaj:109804929 173.326