Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca06g01190 ATGGTGATTTCAAATGAGAACACTTCCAAACCAATCAACCCCACAAATTTTCAAGGAGGGATAGATTGTGTGGGAAACAGAAAGATGGGGCAGAACAGAAGGGCGTTGAGTGTTATCAATCAGAGTCTGGTGGCAGAAGGGAGACCTTACCCTTGTGTTGTTAACAAGAGGGCCTTGGCAGAAAAACACGATGTTTGTGAGAAGAAGCAAGCGGATCCGGTGCATCGACCCATCACAAGGAGGTTTGCTGCACAAATTGCTAGCACACAGCAAAATCGTGCTGAGGACACCAAAAAGTCAAACTTGGGAAATTCAAATTCGAATGGATTTGGGGAGAGTATATTTGTTGATGATGAACATAATATGCCAACGGATGACCAGCCAGTGCCCATGTCTTTGGAACAGACAGAACCAATGCATAGTGAATCAGATCAGATGGAGGAAGTTGAGATGGAAGATATACTTGAAGAGACTGTTTTGGATATTGATACCTGTGATGCCAGTAATCCTCTTGCAGTTGTGGACTATATTGAAGATCTTTATGCTTACTACAAAAAAACTGAGGGCACTAGCTGTGTCTCACCTAATTATATGACACAACAAATTGACATTAATGAAAGGATGAGAGCTATTCTTGTTGACTGGCTTATTGAGGTGCACGACAAATTTGACCTCATGCACGAGACATTGTTTCTCACGGTTAATCTCATAGATAGATTTTTGGCAAAGCAGTCAGTGGTAAGGAAGAAGCTTCAGTTGGTTGGTCTAGTTGCCATGCTTTTGGCATGCAAGTATGAAGAAGTTTCGGTACCTGTGGTGGGGGATCTAATTCTCATATCAGACAAAGCATACACAAGGAAAGAAGTTCTGGAAATGGAGAAGTTGATGGTCAACACATTGCAGTTTAACATGTCTGTGCCTACAGTATATGTTTTTATTAAAAGATTCCTAAAGGCAGCTCAAGCAGACAAAAAGCTTGAGCTATTGGCTTTCTTCTTAGTAGAGCTATGTCTAGTGGAATATGATATGCTGAAATTCCCTCCATCTCTGCTAGCAGCAGCTGCTGTCTATACAGCTCAATGCACCATGTATGGTGTCAAACAATGGACTAAAACATGTGAATGGCACTCCAATTACTCAGAAGAACAGCTATTAGAGTGCTCTACACTAATGGTTGATATTCATATGAAGGCTGGGAATGGAAAACTTACTGGGGTACATAGGAAGTACTGCTCATCTAAATTTAGCTATACTGCAAAATGTGAACCAGCACGTTTTCTTCTGGAGAACCCATTGTAG 1299 0.4134 MVISNENTSKPINPTNFQGGIDCVGNRKMGQNRRALSVINQSLVAEGRPYPCVVNKRALAEKHDVCEKKQADPVHRPITRRFAAQIASTQQNRAEDTKKSNLGNSNSNGFGESIFVDDEHNMPTDDQPVPMSLEQTEPMHSESDQMEEVEMEDILEETVLDIDTCDASNPLAVVDYIEDLYAYYKKTEGTSCVSPNYMTQQIDINERMRAILVDWLIEVHDKFDLMHETLFLTVNLIDRFLAKQSVVRKKLQLVGLVAMLLACKYEEVSVPVVGDLILISDKAYTRKEVLEMEKLMVNTLQFNMSVPTVYVFIKRFLKAAQADKKLELLAFFLVELCLVEYDMLKFPPSLLAAAAVYTAQCTMYGVKQWTKTCEWHSNYSEEQLLECSTLMVDIHMKAGNGKLTGVHRKYCSSKFSYTAKCEPARFLLENPL 432
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca06g01190 432 Gene3D - 193 305 - -
Cca06g01190 432 PANTHER CYCLIN-B2-1 22 427 - -
Cca06g01190 432 CDD CYCLIN 305 392 IPR013763 -
Cca06g01190 432 ProSitePatterns Cyclins signature. 209 240 IPR006671 -
Cca06g01190 432 Gene3D - 179 419 - -
Cca06g01190 432 CDD CYCLIN 208 297 IPR013763 -
Cca06g01190 432 SUPERFAMILY Cyclin-like 306 424 IPR036915 -
Cca06g01190 432 SUPERFAMILY Cyclin-like 168 304 IPR036915 -
Cca06g01190 432 MobiDBLite consensus disorder prediction 86 112 - -
Cca06g01190 432 MobiDBLite consensus disorder prediction 86 114 - -
Cca06g01190 432 PANTHER CYCLINS 22 427 IPR039361 -
Cca06g01190 432 SMART Cyclin_C_2 307 424 IPR004367 -
Cca06g01190 432 SMART cyclin_7 214 298 IPR013763 -
Cca06g01190 432 SMART cyclin_7 311 393 IPR013763 -
Cca06g01190 432 Pfam Cyclin, C-terminal domain 307 422 IPR004367 -
Cca06g01190 432 Pfam Cyclin, N-terminal domain 179 305 IPR006671 -
Cca06g01190 432 PIRSF Cyclin_A_B_D_E 22 432 IPR039361 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca06g01190 Cca-Chr6 26299721 26303448 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca06g01190 1 428 Core Cell Cycle Gene Families AT1G20610 58.810 1.35e-176 498
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca06g01190 K21777 - gmx:100798068 779.245