Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca06g01188 ATGGGAGGTGACGCTGCCGCCGCTGAGAGTGCCACGACGGAGTCGAACGCCGCCGCTGCCGGAGTCAACATCAATATTCGCTGCTCCAATGGTTCAAAGTTTTCCGTTCAGATTACCCTCGATTCCACCGTTGCATCCTTCAAGGACATCGTGGCTCGCAACTGCGACATTCCTGCCGATCAACAGCGTCTGATTTACAAGGGTCGGATCCTCAAGGACGATCAAACCCTCCAAAGCTACGGTTTGGAGGCAGATCACACTGTCCACTTGGTTCGTGGCTTTGCTCCTTCCAACACCACTGGTGGGACTAATAGTAGTGGTGCCAATACCACTACAACTAACACGAGAGGTGTTGGTGCTAATGAGGGTGGTGGGGGTTTAGGAGGGCCTGGATTTGGAGCTTCACTGTTCCCCGGGCTTGGTGGTAATGGGATGGGGGGTAGTGGCCTCAATGGCTTATTTGGAGCGGGCTTTCCGGACCTTGAACAAATGCAGCAACCCTTTTTATCAAATCCTAACTTGGTGAGAGATATAATGAACACGCCTGCCATGCAGAATTTGATAAATAATCCAGAGATAGTGCGGAATCTTATAATGAATAACCCACAAATGCAAGAACTCATGGATAGAAACCCTGAGCTGGCACACATACTTAATGATCCCAGCACTCTTCGTCAGACGCTTGAAGCTACAAGGAACCCTGAGATCATGCGCGAAATGATGAGGAATACAGACAGAGCAATGAGCAACATTGAATCTTCTCCCGAGGGATTCAACATGCTGAGGCGCATGTATGAAAATGTTCAAGAACCATTTTTAAATGCCACTACAATGGCGGGTAACACAGGAAATGATGGTGCAGCAGTCAGGAACCAATCAACTAATCCCTCGACTACTAATTCTGAAGCAACTTCCCCTGTACCTAATACTAACCCACTTCCTAATCCTTGGTCCGCCACTGGAACTGGAGGTGCCCAAAATAACACTAGAAGGGCAACAACTACTGGTGGGGATGCTCGACAGCAGACACCCACTGGCTTAGGAGGGCTTGGACTGCCAGATCTTGAAGGCATGATGGGTGGGATGCCAGATGCTGCTATGTTGACCCAGTTAATGCAAAATCCAGCTATTTCACAAATGATGCAAAGTATCCTTTCCAATCCACAGACTATGAATCAGATTCTTGGTGTCAATAATGAACAGCGTGGCATGCCTGATTTAAATTCTCTAAGGGAGGTGATGCAAAACCCAGAGTTTCTTCGTCTGTTTTCCTCACCTGAGACACTGCAGCAACTCTTGTCTTTTCAGCAAGCTCTTTTGTCTCAGCTTGGTCAGCAACAATCAACACAGGAACCAGGTCAAACAGGTGGAGGCACTGGACCGATTAACAACAGCTTGGGTCTGGAGATGTTATCAAGCATGTTTGGTGGACTTGGAGCTGGTAGCCTGGCTGTTCCTAACAGATCAAATGAGCCACCTGAGCAATTGTATGCCACCCAGCTTTCTCAGCTTCAAGAGATGGGGTTCTTTGACACACAAGAGAACATAAGGGCTCTTATTGCTACATCAGGGAACGTTCATGCAGCAGTTGAACGGCTTTTGGGGAATTCTGGACAGTAG 1620 0.4821 MGGDAAAAESATTESNAAAAGVNINIRCSNGSKFSVQITLDSTVASFKDIVARNCDIPADQQRLIYKGRILKDDQTLQSYGLEADHTVHLVRGFAPSNTTGGTNSSGANTTTTNTRGVGANEGGGGLGGPGFGASLFPGLGGNGMGGSGLNGLFGAGFPDLEQMQQPFLSNPNLVRDIMNTPAMQNLINNPEIVRNLIMNNPQMQELMDRNPELAHILNDPSTLRQTLEATRNPEIMREMMRNTDRAMSNIESSPEGFNMLRRMYENVQEPFLNATTMAGNTGNDGAAVRNQSTNPSTTNSEATSPVPNTNPLPNPWSATGTGGAQNNTRRATTTGGDARQQTPTGLGGLGLPDLEGMMGGMPDAAMLTQLMQNPAISQMMQSILSNPQTMNQILGVNNEQRGMPDLNSLREVMQNPEFLRLFSSPETLQQLLSFQQALLSQLGQQQSTQEPGQTGGGTGPINNSLGLEMLSSMFGGLGAGSLAVPNRSNEPPEQLYATQLSQLQEMGFFDTQENIRALIATSGNVHAAVERLLGNSGQ 539
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca06g01188 539 ProSiteProfiles Ubiquitin domain profile. 22 91 IPR000626 GO:0005515
Cca06g01188 539 SUPERFAMILY Ubiquitin-like 14 108 IPR029071 -
Cca06g01188 539 CDD Ubl_Dsk2p_like 22 94 - -
Cca06g01188 539 Gene3D - 479 539 - -
Cca06g01188 539 PANTHER UBIQUILIN 1 539 - -
Cca06g01188 539 SMART uba_6 497 535 IPR015940 -
Cca06g01188 539 CDD UBA_PLICs 497 535 - -
Cca06g01188 539 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 491 536 IPR015940 -
Cca06g01188 539 SUPERFAMILY UBA-like 493 535 IPR009060 GO:0005515
Cca06g01188 539 SMART CBM 352 394 IPR006636 -
Cca06g01188 539 SMART CBM 201 240 IPR006636 -
Cca06g01188 539 SMART CBM 397 432 IPR006636 -
Cca06g01188 539 SMART CBM 147 188 IPR006636 -
Cca06g01188 539 Pfam UBA/TS-N domain 497 533 IPR015940 -
Cca06g01188 539 Gene3D - 8 107 - -
Cca06g01188 539 PANTHER UBIQUITIN DOMAIN-CONTAINING PROTEIN DSK2A-RELATED 1 539 - -
Cca06g01188 539 MobiDBLite consensus disorder prediction 276 342 - -
Cca06g01188 539 MobiDBLite consensus disorder prediction 276 351 - -
Cca06g01188 539 MobiDBLite consensus disorder prediction 443 464 - -
Cca06g01188 539 Gene3D - 196 254 - -
Cca06g01188 539 SMART ubq_7 22 93 IPR000626 GO:0005515
Cca06g01188 539 Pfam Ubiquitin family 24 91 IPR000626 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca06g01188 Cca-Chr6 26274798 26281436 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca06g01188 22 91 Cytoplasmic Ribosomal Protein Gene Family AT3G52590 31.429 1.78e-07 48.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca06g01188 K04523 - gmx:100797539 837.025
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca06g01188 06 26274798 26281436 Cca06g01188 06 26274798 26281436 ECH