Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca06g01187 ATGACAAAAAAAGTAAAAAACACACACATATTTCTTCCTGAAGAGGCACCAATAGTTTCATCGTTTCGCAAATGGGTGCGTACTACGCAGCAACATCAAGAAAACGAGCAAAACCCTTCCGAGAATTCTCCCTCCAACGATGACGCACCCAATCCGCAGGGTGGCGAAGGTGAGATCATGAAGACCCCTTGGCAAGTGTTGGAGGAGCTTTGCGGTGGTTCCTCCACCCCCGTGGCTGTGGCTCCGGTGAGCGAGGGAGTACTCCAACCCAAAAAAAGAAAAACTTCCGAAGTGAGAGACCCTCCAAGGGGAAAACCCATTTGCCCTGTTTGCAACAAAGAATTCACTTCATGGAAGGCCGCGTTTGGCCACATGCGTGCACACCCAAATCGTGATTACCGCGGTTTCTACAAGCCTCCAGCGTTTCCCTCCTCATCCTCATCGAAAGATCAACCACCACCTAGTGCTAACAACAACAAGGGTGGTGGTGCCAAGAAGACTAACGCCGCTAGTGATGGTACTGACGAGGTTGACAGTGGTGGGGGGAAAGAGGTGACACCATCTCCTAATCAATTGTTTGGCTTTGATCTGAATGAACCTGTGGAGGGACTTGGATCCTCTCACGCCGTTGAAGAGGAGCCCAACGCGAATGCGAATTTGGATCTTAATCTTCACTTCGTCTGTTCTTCGATCTTGCGAACTAGTGAGCTGGAGTTTCAATAA 723 0.4965 MTKKVKNTHIFLPEEAPIVSSFRKWVRTTQQHQENEQNPSENSPSNDDAPNPQGGEGEIMKTPWQVLEELCGGSSTPVAVAPVSEGVLQPKKRKTSEVRDPPRGKPICPVCNKEFTSWKAAFGHMRAHPNRDYRGFYKPPAFPSSSSSKDQPPPSANNNKGGGAKKTNAASDGTDEVDSGGGKEVTPSPNQLFGFDLNEPVEGLGSSHAVEEEPNANANLDLNLHFVCSSILRTSELEFQ 240
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca06g01187 240 MobiDBLite consensus disorder prediction 24 50 - -
Cca06g01187 240 ProSitePatterns Zinc finger C2H2 type domain signature. 108 128 IPR013087 -
Cca06g01187 240 MobiDBLite consensus disorder prediction 24 61 - -
Cca06g01187 240 MobiDBLite consensus disorder prediction 141 165 - -
Cca06g01187 240 PANTHER ZINC FINGER PROTEIN ZAT2-RELATED 78 223 - -
Cca06g01187 240 MobiDBLite consensus disorder prediction 135 210 - -
Cca06g01187 240 PANTHER TRANSCRIPTION REGULATORY PROTEIN SNF2-LIKE 78 223 - -
Cca06g01187 240 MobiDBLite consensus disorder prediction 77 104 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca06g01187 Cca-Chr6 26258737 26266423 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca06g01187 108 149 C2H2 Transcription Factor Family AT4G35280 52.273 9.02e-09 52.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Cca06g01187 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca06g01187 - - ccaj:109799859 322.783