Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca06g01184 ATGGGTCTCTGTCTTGCTTCGCTCGCTTCCCACCAAACACCTTCTAAATCAGGTGGGTCAGCACGTGAGTCCTTGGAGAGTGTGCATGTTGAAAGCAATAGTGTTAATGGCACTGTGTTTCCGAGTGAGGAAATGCAAAACTTGAAGGTGTTCAATTTTGCGGATCTGAAAGCTGCAACGAAGAGTTTCAGGTCGGATTCATTGCTGGGAGAAGGTGGTTTCGGGAAAGTGTACAAAGGATGGTTGCATGAGAAGAGACTAACACCCACCAAAGCTGGATCTGGAATGGTGGTTGCTGTTAAGAAATTGAATCCTCAAAGTTTTCAAGGCTTTCGAGAGTGGCAGTCAGAAATCAATTTTTTAGGAAGGATTTCTCATCCAAACCTGGTCAAGCTTTTGGGCTATTGTTGTGACGATGTTGAATTTCTTCTTGTGTACGAGTTCATGCCAAAGGGAAGCTTGGAGAATCACCTTTTTAGAAGAAATACTAATACAGAACCACTCTCTTGGAACACTCGACTGAAAATAGTTATTGGTGCTGCTCGTGGCTTGGCTTTCTTACATACCTCAGAAAAACAAATCATATACAGAGATTTCAAAGCATCAAATATACTACTTGATGAGGATTACAATGCAAAAATCTCAGATTTTGGCTTGGCCAAATTGGGCCCTTCTGCGGGAAATTCACATGTGACTACTCGGATCATGGGCACATATGGCTATGCTGCTCCAGAATACATTGCAACAGGACACTTGTATGTGAAGAGTGATGTGTATGGTTTTGGTGTAGTGCTACTTGAAATGCTGACAGGTTTGCGTGCACTTGATAAAAATCGGCCCATAGAGCAACAGAACCTAGTTGAATGGGCAAAGCCTTCTCTCTCTAATAAAAGAAAGTTGAAAAGCATTGTGGATGAGAGGATAGAGGGTCAGTATTCAGCTAAAGAAGCATGGAAAATGGCACAACTTACTCTAAAATGCCTTGAACGTAATCATAGAAAACGTCCTCATATGAAAGATGTTGTCGAGACATTGGAATGCATCCAGGCTATCAAAGATAAAAGGAAGTAA 1071 0.4183 MGLCLASLASHQTPSKSGGSARESLESVHVESNSVNGTVFPSEEMQNLKVFNFADLKAATKSFRSDSLLGEGGFGKVYKGWLHEKRLTPTKAGSGMVVAVKKLNPQSFQGFREWQSEINFLGRISHPNLVKLLGYCCDDVEFLLVYEFMPKGSLENHLFRRNTNTEPLSWNTRLKIVIGAARGLAFLHTSEKQIIYRDFKASNILLDEDYNAKISDFGLAKLGPSAGNSHVTTRIMGTYGYAAPEYIATGHLYVKSDVYGFGVVLLEMLTGLRALDKNRPIEQQNLVEWAKPSLSNKRKLKSIVDERIEGQYSAKEAWKMAQLTLKCLERNHRKRPHMKDVVETLECIQAIKDKRK 356
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca06g01184 356 CDD STKc_IRAK 69 346 - -
Cca06g01184 356 Gene3D Transferase(Phosphotransferase) domain 1 149 356 - -
Cca06g01184 356 SUPERFAMILY Protein kinase-like (PK-like) 33 345 IPR011009 -
Cca06g01184 356 Pfam Protein tyrosine and serine/threonine kinase 66 345 IPR001245 GO:0004672|GO:0006468
Cca06g01184 356 ProSitePatterns Serine/Threonine protein kinases active-site signature. 194 206 IPR008271 GO:0004672|GO:0006468
Cca06g01184 356 ProSiteProfiles Protein kinase domain profile. 63 348 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca06g01184 356 ProSitePatterns Protein kinases ATP-binding region signature. 69 102 IPR017441 GO:0005524
Cca06g01184 356 Gene3D Phosphorylase Kinase; domain 1 34 148 - -
Cca06g01184 356 PANTHER SERINE/THREONINE-KINASE CX32, RELATED PROTEIN 18 355 - -
Cca06g01184 356 PANTHER OS01G0588500 PROTEIN-RELATED 18 355 - -
Cca06g01184 356 MobiDBLite consensus disorder prediction 8 28 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca06g01184 Cca-Chr6 26239152 26241794 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca06g01184 49 345 Glycoside Hydrolase AT3G07070 47.987 8.97e-98 294
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Cca06g01184 PK_Tyr_Ser-Thr 7.5e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca06g01184 - - gmx:100777578 596.275
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca06g01184 06 26239152 26241794 Cca06g01184 06 26239152 26241794 ECH