Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca06g01183 ATGGGTCAGTGCTTCGCTTCTCTCCTTCCCCACCATTCAGGTTCAGCGCGTGCGGCAACATCCTTGGGGAGCGTGGAAGAAAGCAGTGGCAACAGTGTTGTTTTTCCGGGCGTGGAAACGCGCCACTTGAAGGAGTTCACTTTCGCGGATTTGAAAGCGGCGACCAAGAGTTTCAGGTCGGAAGCATTGCTGGGAGAAGGTGGTTTCGGGAAAGTGTACAAAGGGTGGTTGGATGCCAAGACGCTCACACCAACCAAAGCAGGTTCTGGAATGATGGTCGCTGTTAAGAAACTCAAATCCCAAAGCACGCAGGGTCTTCGAGAATGGCAGTCCGAAATTAACTTTTTAggaatgatttctcatccaaacctggtcaagcttttgggttattgttgtgaagatgctgaatttctccttgtgtatgaattcatgccaaaGGGAAGCCTGGAGAATCATCTATTTTGGAGAAATACTAATGTAGAACCACTTTCTTGGGACACCCGACTCAAAATAGCTACTGGTGCTGCTCGTGGTTTGGCTTTCTTACATACCTCAGAAAAACAAATAATATATAGAGATTTCAAAGCAGCCAACATATTACTTGATGAGGATTATAACCCAAAAATTTCGGATTTTGGTCTGGCCAAATTAGGGCCACCTATAGGAGATTCACATGTGACAACTAGAATTATGGGCACACATGGCTATGCTGCTCCGGAATACATTGCAACAGGCCACCTGTATATCAAGAGTGATGTGTATGGTTTTGGTGTGGTGCTGCTTGAAATGCTGACCGGATTGCGTGCACTTGATAGAACCCGTCCCACAGGACAGGAGAATCTAGTTGAATGGATTAAGCTTTCTCTCTCAGATAAAGCAAACTTGAAACACATTATGGATGAGAAAATAGAGGGTCAATATTCAACCAAAGCAGCATTTAAAACAGCACAACTTATTTTAAAGTGCCTTGAAAATAACCCTAAACCACGTCCTCATATGAAAGATGTTGTGGAGACATTGGAAAGCATCCAAGCTATCGATGTTAGAAGAAAGGAATGCAAGAGACGTAAGTTTGCAACGAAGCTCAATTTGCAATAG 1098 0.4071 MGQCFASLLPHHSGSARAATSLGSVEESSGNSVVFPGVETRHLKEFTFADLKAATKSFRSEALLGEGGFGKVYKGWLDAKTLTPTKAGSGMMVAVKKLKSQSTQGLREWQSEINFLGMISHPNLVKLLGYCCEDAEFLLVYEFMPKGSLENHLFWRNTNVEPLSWDTRLKIATGAARGLAFLHTSEKQIIYRDFKAANILLDEDYNPKISDFGLAKLGPPIGDSHVTTRIMGTHGYAAPEYIATGHLYIKSDVYGFGVVLLEMLTGLRALDRTRPTGQENLVEWIKLSLSDKANLKHIMDEKIEGQYSTKAAFKTAQLILKCLENNPKPRPHMKDVVETLESIQAIDVRRKECKRRKFATKLNLQ 365
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca06g01183 365 ProSitePatterns Serine/Threonine protein kinases active-site signature. 189 201 IPR008271 GO:0004672|GO:0006468
Cca06g01183 365 Gene3D Phosphorylase Kinase; domain 1 32 143 - -
Cca06g01183 365 CDD STKc_IRAK 64 343 - -
Cca06g01183 365 SUPERFAMILY Protein kinase-like (PK-like) 37 340 IPR011009 -
Cca06g01183 365 PANTHER OS01G0588500 PROTEIN-RELATED 10 354 - -
Cca06g01183 365 Gene3D Transferase(Phosphotransferase) domain 1 144 362 - -
Cca06g01183 365 ProSiteProfiles Protein kinase domain profile. 58 343 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca06g01183 365 PANTHER SERINE/THREONINE-KINASE CX32, RELATED PROTEIN 10 354 - -
Cca06g01183 365 Pfam Protein tyrosine and serine/threonine kinase 61 340 IPR001245 GO:0004672|GO:0006468
Cca06g01183 365 ProSitePatterns Protein kinases ATP-binding region signature. 64 97 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca06g01183 Cca-Chr6 26229565 26232222 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca06g01183 46 340 Glycoside Hydrolase AT3G07070 48.822 4.51e-94 285
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Cca06g01183 PK_Tyr_Ser-Thr 2.5e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca06g01183 - - gmx:100778116 557.37