Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca06g01182 ATGGACACCTCTTTGCTCACCCACCTACTACTCCTCAACAACACCCTCCAACCAGAGTTAATGAGGAGCGTGCATGTGTACCGCCAAGGGGAGGGGGAGGAAAGGGAAGTTGAAAGAGAGTTTGTGTTTTCAGAGAGTGGTTCCTATGGGGAAATGCAGGCTACCCCAATTTTTAGATTGAAGAAATCTTGTGTTTCTGAAGTGTGTGAAGGGTACCGGAATGGAGTGTGGCTTTGTATATTTGCGTTTCATGTTGATCATACACCTCAATTTTCAGGCATTCCACCCCTTTTGTTGGTCACAAGAAATCCAAAGCTTCAGATGATTCCAAATTTGCTTAATGATCTCCATAAGATATACAAGTTGGACCAGAAGGAGGAAGACAAAGATATACCGCAAGACTCCACAGGGGAAGAATGGCAAGGAAACAACAACATTTCCGAACCATCACAAAAAGTCTTTCGTGTTCTTGAACAGGATCTCAATTGTCTTCCTTACGAAGAAGAAGAGTCTGAGTTACTGGACAATGACACAGATGTTGAAAGCTCACCAGGTTTGATAGAGAAGAAAAAGAGGGCACCGAGTGATCTTGTAGCAAAAATTTCTTTATCAGATTTGGTCAAGTACTTTGGTATGCCAATTGTAGAAGCATCAAGAAATCTAAATGTTGGGCTTACTGTTCTCAAGAGAAAGTGCAGAGAATTTGGTATTCCCCGCTGGCCTCATAGGAAGATCAAATCACTAGACAGTCTCATTCATGATCTTCAGGAAGAGGCAAAGCACCAAGAATTGGAGGACATGGAAGCAGCCATGGCAGTGACAAAGAGGCAAAAGATGTTGGAGAATGAAAAGGAAGACATAGAGAAGAGACCCTTCATGGACATACAAAGTGAGACCAAGAGATTTAGGCAAGATGTTTTCAAGAGAAGACACAGAGCTAGAGCTATTGAAAAACATAATTCTACAGTATCCACCACATAG 981 0.422 MDTSLLTHLLLLNNTLQPELMRSVHVYRQGEGEEREVEREFVFSESGSYGEMQATPIFRLKKSCVSEVCEGYRNGVWLCIFAFHVDHTPQFSGIPPLLLVTRNPKLQMIPNLLNDLHKIYKLDQKEEDKDIPQDSTGEEWQGNNNISEPSQKVFRVLEQDLNCLPYEEEESELLDNDTDVESSPGLIEKKKRAPSDLVAKISLSDLVKYFGMPIVEASRNLNVGLTVLKRKCREFGIPRWPHRKIKSLDSLIHDLQEEAKHQELEDMEAAMAVTKRQKMLENEKEDIEKRPFMDIQSETKRFRQDVFKRRHRARAIEKHNSTVSTT 326
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca06g01182 326 Coils Coil 270 290 - -
Cca06g01182 326 MobiDBLite consensus disorder prediction 127 146 - -
Cca06g01182 326 PANTHER PROTEIN RKD5 8 319 - -
Cca06g01182 326 Coils Coil 245 265 - -
Cca06g01182 326 ProSiteProfiles RWP-RK domain profile. 183 268 IPR003035 -
Cca06g01182 326 PANTHER PROTEIN RKD4 8 319 IPR044607 GO:0003700
Cca06g01182 326 Pfam RWP-RK domain 201 248 IPR003035 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca06g01182 Cca-Chr6 26219100 26224526 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca06g01182 16 326 AtRKD Transcription Factor Family AT4G35590 48.024 7.33e-90 270
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF RWP-RK Cca06g01182 RWP-RK 2.9e-21 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca06g01182 - - gmx:113001653 527.324
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca06g01182 06 26219100 26224526 Cca06g01182 06 26219100 26224526 ECH