Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca06g01173 ATGTCGTGTTCTTCGTCATCAGGGGAGGAAGACGATGAGGGATTCGACTCTTACCGGAAAGGCGGCTACCACGCCGTCAGGCTCGCCGATCAGTTCGCCGCCGGCAGGTACATAGCGCAGAGGAAGCTCGGTTGGGGTCAATTTTCCACCGTCTGGCTCGCTTACGATACTAAAACTTCTTCATATGTTGCTCTCAAGATACAGAAAAGTGCCGCCCAGTTTGTTCAGGCTGCCCTTCATGAGATTGATGTTCTTTCATCCGTAGCTGACAGTGACCCGTCAAATTCAAAATTTGTCATTCAATTGATTGACCACTTTAAGCACACAGGTCCAAATGGGCAACATCTTTGTATGGTCCTTGAGTTTCTTGGTGATAGCTTGCTTCGCTTGATCAGATATAACCATTACAAAGGTCTTCCATTGAATAAAGTTAGAGAGATTTGCAAATGCGTTTTGATTGGTTTGGATTACTTGCATACTGATCTTGGTATAATCCACAGTGACCTAAAACCTGAAAACATTCTTTTATGTTCAACCATTGATCCTGCCAAAGACCCTTTTCGATCTGAACACTCCCCAATTCTAGAACGGCCTGAGGGAAACGCAAACGGTGGAGTTACAAGTCTTATCGAGAAAAGGTTGAAGAGTAGAGCAAGGAAGGCGGTTGCTAAGATATCTGGAAGAAGAGAGTCAATGGGAGGATCAGGAGATGTTGAAAATAGTGGTAGAGTTGATGGGATTGATGTGAGATGCAAGATAGTAGATTTTGGAAATGCTTGTTGGGCTGATAAGCATTTTGCAGAAGAAATACAGACAAGGCAGTACAGAGCGCCTGAAGTTATACTGAAGGCTGGCTATTCCTTCTCTGTTGACATGTGGTCTTTTGCATGCATTGCTTTTGAACTTGCCACTGGAGACATGTTGTTTACACCTAAGGATGGACAAGGTTTTAGTGAGGATGAGGATCACCTTGCCCTGATGATGGAACTCCTTGGAAAGATGGCTCGGAAGATTGCTACTGGTGGAGCTCTATCCAAGGATTTCTTTGATAGGCATGGGGATCTAAAAAGGATTAGAAGGCTAAAATTCTTTCCACTTGACAAATTACTGATTGATAAATATAAATTCTCAGTGAATGATGCTCAAGAGTTTTCAGAATTTCTTTTACCACTCTTTGATTTTGCACCGGAGAAGCGACCAACTGCAAGACAGTGCCTGCAACACCCATGGCTGAAATGTCCCAATGAAGAGGAAAATGAATCTTCTGTGAATGTTGAAATGAGCAACCTCAAAATCAAGGGGGGAAAGTGA 1311 0.434 MSCSSSSGEEDDEGFDSYRKGGYHAVRLADQFAAGRYIAQRKLGWGQFSTVWLAYDTKTSSYVALKIQKSAAQFVQAALHEIDVLSSVADSDPSNSKFVIQLIDHFKHTGPNGQHLCMVLEFLGDSLLRLIRYNHYKGLPLNKVREICKCVLIGLDYLHTDLGIIHSDLKPENILLCSTIDPAKDPFRSEHSPILERPEGNANGGVTSLIEKRLKSRARKAVAKISGRRESMGGSGDVENSGRVDGIDVRCKIVDFGNACWADKHFAEEIQTRQYRAPEVILKAGYSFSVDMWSFACIAFELATGDMLFTPKDGQGFSEDEDHLALMMELLGKMARKIATGGALSKDFFDRHGDLKRIRRLKFFPLDKLLIDKYKFSVNDAQEFSEFLLPLFDFAPEKRPTARQCLQHPWLKCPNEEENESSVNVEMSNLKIKGGK 436
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca06g01173 436 SUPERFAMILY Protein kinase-like (PK-like) 31 416 IPR011009 -
Cca06g01173 436 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE 6 436 - -
Cca06g01173 436 CDD STKc_SRPK 26 411 - -
Cca06g01173 436 PANTHER SERINE/THREONINE KINASE FAMILY PROTEIN 6 436 - -
Cca06g01173 436 Gene3D Transferase(Phosphotransferase) domain 1 91 411 - -
Cca06g01173 436 Pfam Protein kinase domain 38 177 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca06g01173 436 Pfam Protein kinase domain 250 411 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca06g01173 436 ProSitePatterns Protein kinases ATP-binding region signature. 43 66 IPR017441 GO:0005524
Cca06g01173 436 Gene3D Phosphorylase Kinase; domain 1 23 122 - -
Cca06g01173 436 SMART serkin_6 37 411 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca06g01173 436 ProSiteProfiles Protein kinase domain profile. 37 411 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca06g01173 436 ProSitePatterns Serine/Threonine protein kinases active-site signature. 164 176 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca06g01173 Cca-Chr6 26100911 26105029 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca06g01173 11 411 EF-hand Containing Proteins AT5G22840 50.331 1.95e-161 464
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_SRPK Cca06g01173 Pkinase 2.1e-22 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca06g01173 K08832 - gmx:100784192 762.681
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca06g01173 06 26100911 26105029 Cca06g01173 06 26100911 26105029 ECH