Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca06g01170 ATGAGTGGTGTCGGTGGTGGGTGCCCCTGCCCCAGGGGTAATAGTGAATGTTCCTTGGAGGATCTCAATGGTGATACTGTAGGGAGTTTGAATCAGAATATTGGGAAGCCTCCAAGGGATCATACGGAATCAAATATTAATATCATTGGACTTAAAACAAGCACAGAAGAAAAATCAGAATTTTCACTTGCATTGCGATCTGGAAGTTGTTCTGATAAAGGACCAAAGCAGTACATGGAGGATGAGTTCATATGTGTTGATATTCTACAGGAAAGTCTCGGCCCAAGAGCAAACCTTCCTTCTCCTGCAGCATTTTATGGGGTATTTGATGGACATGGTGGTGTTGATGCAGCATCATTTACCAGAAAGAACATCCTTAAGTTTATAATTGAAGATGCACATTTCCCATCTGGCATTAAGAAAGCAGTTAAGAGTGCATTTGTGAAGGTTGATCTTGCATTTAGAGATGCTAGTACTCTTGATAATTCTTCAGGCACCACTGCTCTAGTGGCCCTTTTGTTGGGAAGTTCCATTCTGATTGCCAATGCGGGGGATTCACGTGCTGTATTAGGTAAACGGGGCAGAGCCATTGAACTTTCTAAAGACCACAAACCAAATTGCACTTCTGAGAGATTAAGAATTGAGAAACTTGGTGGTGTCATATATGATGGATACCTCAATGGCCAACTATCAGTGGCTCGTGCCCTTGGAGATTGGCACATCAAAGGTTCTAAAGGCTCTAAGAGCCCCTTGAGCTCTGAGCCAGAGCTGGAGGAGATTGTGTTGACAGAAGAAGATGAGTTTTTGATAATAGGTTGTGATGGATTATGGGATGTGATGAGCAGCCAGTGTGCTGTTACAATGGTGAGGAGGGAGCTCATGCAGCATAATGATCCCACCACATGTGCAAAGGTACTTGTTGCTGAGGCACTCCAACGCAACACATGTGACAACCTTACAGTTGTGGTGGTGTGTTTCTCCAAGGATCCACCTCCTAAGATTGAAATTCCTAGATCATATAGGAGGAGGAGTATTTCTGCTGAAGGCCTTGATCTTCTCAAGGGTGTCTTGAATGGTAGATGA 1083 0.4377 MSGVGGGCPCPRGNSECSLEDLNGDTVGSLNQNIGKPPRDHTESNINIIGLKTSTEEKSEFSLALRSGSCSDKGPKQYMEDEFICVDILQESLGPRANLPSPAAFYGVFDGHGGVDAASFTRKNILKFIIEDAHFPSGIKKAVKSAFVKVDLAFRDASTLDNSSGTTALVALLLGSSILIANAGDSRAVLGKRGRAIELSKDHKPNCTSERLRIEKLGGVIYDGYLNGQLSVARALGDWHIKGSKGSKSPLSSEPELEEIVLTEEDEFLIIGCDGLWDVMSSQCAVTMVRRELMQHNDPTTCAKVLVAEALQRNTCDNLTVVVVCFSKDPPPKIEIPRSYRRRSISAEGLDLLKGVLNGR 360
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca06g01170 360 Pfam Protein phosphatase 2C 68 318 IPR001932 -
Cca06g01170 360 SMART PP2C_4 56 324 IPR001932 -
Cca06g01170 360 ProSiteProfiles PPM-type phosphatase domain profile. 66 326 IPR001932 -
Cca06g01170 360 Gene3D - 50 330 IPR036457 -
Cca06g01170 360 PANTHER PROTEIN PHOSPHATASE 2C 41 347 IPR015655 GO:0004722|GO:0006470
Cca06g01170 360 SUPERFAMILY PP2C-like 59 327 IPR036457 -
Cca06g01170 360 CDD PP2Cc 66 326 IPR001932 -
Cca06g01170 360 PANTHER PROTEIN PHOSPHATASE 2C 47-RELATED 41 347 - -
Cca06g01170 360 ProSitePatterns PPM-type phosphatase domain signature. 105 113 IPR000222 GO:0043169
Cca06g01170 360 SMART PP2C_SIG_2 81 326 IPR001932 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca06g01170 Cca-Chr6 26078817 26081080 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca06g01170 49 358 PP2C-type Phosphatase Gene Family AT3G51470 77.419 4.81e-176 489
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca06g01170 K14803 - gmx:100786416 631.713
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca06g01170 06 26078817 26081080 Cca06g01170 06 26078817 26081080 ECH