Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca06g01168 ATGGTTTTCTCCAATGGATACGCTTCAACTGGAGCGGGCATGAATAATTCCACAATACCAGATTTTGTAAATATTGGGGCTCTCTTCTCTTTCAATACCAGTGTTGGTAAAAGTGTACAAATTGCTATAGAAGCTGCGATTGAAGATGTAAATTCTAATCCAAATATTCTTGGTCAAACCAAGCTGAACCTCTCACTGCAAGAAGATTCAAAGTATAGAGGTTTCCTGAGCATTGCTGAGGTTTTGCAGGTCATGGCAAGACAATCGGTGGCAATAATTGGCCCTCATAGCTCTGTAACAGCTCATGTCATAACTCATATTGCAAATGAGCTCCAAGTTCCTCTGCTGTCATTTTCAGCTTTGGACCCTACCCTCTCTTCACTTCAATTCCCATTCTTCATTAGAACTTGTCATAGTGATCTTTATCAAATGGCTGCAATAGCAGACCTTGTTGACTACTATGGTTGGAAAGATGTTATTGCTGTCTACTTTGATGATGATAATGGGAGAAATGGAATTGGCGCATTAGGTGATAAGCTGGCTGAGAAGCGGTGCAGGATATCATATAAAGCACCTTTGAGCCCTGAAGCATCTCTTGAAGAGATTACTAATGTGCTTGTTCAGGTGGCTCTGGCAGAATCACGAGTAATAGTTGTTCATGCCAATACTCAATGGGGGCCCAAGGTGTTTACTGTTGCGAATAATCTTGGGATGATGGGAACTGGGTATGTCTGGATAGCCACTGCTTTCCTCTCTGCTCTGCTTGATATTCAAAATCACCTCTCTTCAGATGCAATCGATGAAATTCAAGGCGTTCTTACACTGCGTATATACACACCAGATTCAAAGCTCAAAAGGAGGTTTGTTTCTAAGTGGAAAAACTTGACTAGTGGAGATAATGCTAATGTCCCCCTTGGATTGAGTTTTGTAGCTCTCTATGCATATGACACTGTTTATGTGCTTGCTCATGCACTTGATGCATTTTTCAAACAAGGTAACCAAATTACATTCTCAACTGATTCAAAGCTATCTAGCATACATGGAGACAATTTGCATCTTGATGCCTTGAAAATCTTTAATGAAGGAAACTTGTTACGCAGTAATATTTACGAGGTTAACATGACTGGTGTATCAGGTCCAATCAAGTATACATCTGATAGAAACCTTGTTAATCCTGCATATGAAATCATTAATGTGGTTGGAACAGGGACTCGGAGGATCGGTTATTGGTCTAATTACTCTGGATTATCAGTTGTCGCTCCAGGAACTCTTCAGTCCAAACCAGCCAGTCTTTCCAGGCAAAGTCAAAAGCTGTTCCCTGTGATTTGGCCTGGAAACACCGATCAGAGACCTCGTGGTTGGGTTTTCCCTAACAATGGAAGGGTCTTAAAGATTGGAGTACCAAAAGGTGTTTTTTACCATGAATTTGTCTCCCAAATAAGAGGCACCGATTTGTTTGAGGGATTCTGCATCGATGTATTTCTTGCTGCAGTGAACCTGTTGTCTTATGCTGTCCCCTATAAGTTCGTACCATATGGGGATGGCAAGAACAATCCTAGTATGACCGAGCTGACTCGTCTGATCACAACCGGCGAATTTGATGGTGCTGTTGGTGACATTGCAATTACTACAGAAAGAACAAGGATGGTGGATTTTACTCAGCCATATATTGAGTCTGGTCTTGTGGTAGTAGCACCAGTTAAGAGGGCAGAAACCAATGCTTTGGCCTTTTTGGCTCCGTTTACACCAAAGATGTGGTGTGTCACAGCTATCTTTTTCATATTAGTGGGAGCTGTTGTTTGGATTTTGGAGCATAGGGTGAATGATGAATTTAGGGGACCACCCAAAAAACAATTAATTACTGTTTTATGGTTTAGTTTTTCAACAATGTTCTTTTCCCACCGGGAAAATACAGTGAGCACACTTGGTCGCTTTGTGTTGATCATATGGTTATTTGTAGTTCTTATAATTAACTCAAGTTACACGGCAAGTCTTACCTCAATCCTCACAGTGCAACAGCTTTATTCGCCCATTAAAGGCATTGAAAGTTTATTAAGTGGCAAAGAGCCTATTGGGTACACGCAGGGTTCTTTTGCTAGAAATTATTTAGTTCAGGAAATTGGTATTGTTGAGTCCAGGCTTGTTCCTCTAACAACACCAGAAGAAGCTGCTAAAGCACTGAGAAAGGGTCCCCAAAATGGGGGTGTTTCTGCATACATCGATGAGCGTGCCTACATGGACATCTTCCTTTCCACCCGATGTAATTTAACTGTTGTAGGTCAAGAGTTCACCAGAAACGGTTGGGGATTTGCATTTCCACGAGACTCGCCATTAGCAGTTGACCTGTCAACTGCCATATTGCAAATGATAGATAGTGGAGATTTACAAAGGATCCATGACAAATGGCTTTTGAGTAGTGCTTGCTTATCACAAGGTGCAAAGCTTGAAGTGGAAAGACTCCAACTTAAAAGCTTTTGGGGCCTCTATGTGATCTGTGGGCTTGCCTGTTTGCTCGCACTCTTCATATATCTAATACAGATTTGGAGGCAATACCACAAGCATTACTCTGAAGAACTTGAGTCGGCTGACCAAAGCCCAGGATCATCAAGATCTTCACGTCTTAAGACTTTCCTTTCCTTTGCAGATGAAAAAGAAGAGACCATTAAGAGCCGGACCAAGAGAAGGAAAATGGAGAGGATCTCATACAGAAGCAGTGAGGGAAGCTCATCCATTAACTCCAATAAGGGATATGCTTCACGCAGAAGTGAATGTGCTGGCGAAGTATGA 2787 0.4177 MVFSNGYASTGAGMNNSTIPDFVNIGALFSFNTSVGKSVQIAIEAAIEDVNSNPNILGQTKLNLSLQEDSKYRGFLSIAEVLQVMARQSVAIIGPHSSVTAHVITHIANELQVPLLSFSALDPTLSSLQFPFFIRTCHSDLYQMAAIADLVDYYGWKDVIAVYFDDDNGRNGIGALGDKLAEKRCRISYKAPLSPEASLEEITNVLVQVALAESRVIVVHANTQWGPKVFTVANNLGMMGTGYVWIATAFLSALLDIQNHLSSDAIDEIQGVLTLRIYTPDSKLKRRFVSKWKNLTSGDNANVPLGLSFVALYAYDTVYVLAHALDAFFKQGNQITFSTDSKLSSIHGDNLHLDALKIFNEGNLLRSNIYEVNMTGVSGPIKYTSDRNLVNPAYEIINVVGTGTRRIGYWSNYSGLSVVAPGTLQSKPASLSRQSQKLFPVIWPGNTDQRPRGWVFPNNGRVLKIGVPKGVFYHEFVSQIRGTDLFEGFCIDVFLAAVNLLSYAVPYKFVPYGDGKNNPSMTELTRLITTGEFDGAVGDIAITTERTRMVDFTQPYIESGLVVVAPVKRAETNALAFLAPFTPKMWCVTAIFFILVGAVVWILEHRVNDEFRGPPKKQLITVLWFSFSTMFFSHRENTVSTLGRFVLIIWLFVVLIINSSYTASLTSILTVQQLYSPIKGIESLLSGKEPIGYTQGSFARNYLVQEIGIVESRLVPLTTPEEAAKALRKGPQNGGVSAYIDERAYMDIFLSTRCNLTVVGQEFTRNGWGFAFPRDSPLAVDLSTAILQMIDSGDLQRIHDKWLLSSACLSQGAKLEVERLQLKSFWGLYVICGLACLLALFIYLIQIWRQYHKHYSEELESADQSPGSSRSSRLKTFLSFADEKEETIKSRTKRRKMERISYRSSEGSSSINSNKGYASRRSECAGEV 928
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca06g01168 928 Pfam Bacterial extracellular solute-binding proteins, family 3 486 803 IPR001638 -
Cca06g01168 928 Pfam Receptor family ligand binding region 39 401 IPR001828 -
Cca06g01168 928 Gene3D - 139 416 - -
Cca06g01168 928 PANTHER GLUTAMATE RECEPTOR 3.6 6 915 - -
Cca06g01168 928 SUPERFAMILY Periplasmic binding protein-like I 19 455 IPR028082 -
Cca06g01168 928 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 6 915 - -
Cca06g01168 928 Gene3D - 751 810 - -
Cca06g01168 928 MobiDBLite consensus disorder prediction 903 919 - -
Cca06g01168 928 PRINTS Metabotropic gamma-aminobutyric acid type B receptor signature 314 326 - -
Cca06g01168 928 PRINTS Metabotropic gamma-aminobutyric acid type B receptor signature 97 125 - -
Cca06g01168 928 PRINTS Metabotropic gamma-aminobutyric acid type B receptor signature 36 52 - -
Cca06g01168 928 SUPERFAMILY Periplasmic binding protein-like II 439 805 - -
Cca06g01168 928 MobiDBLite consensus disorder prediction 884 928 - -
Cca06g01168 928 Gene3D - 574 700 - -
Cca06g01168 928 Gene3D - 458 573 - -
Cca06g01168 928 Pfam Ligand-gated ion channel 804 836 IPR001320 GO:0015276|GO:0016020
Cca06g01168 928 CDD PBP1_GABAb_receptor_plant 24 420 IPR044440 -
Cca06g01168 928 PIRSF IGluLR_plant 1 926 IPR017103 -
Cca06g01168 928 Gene3D - 41 391 - -
Cca06g01168 928 SMART GluR_14 462 805 IPR001320 GO:0015276|GO:0016020
Cca06g01168 928 CDD GluR_Plant 461 803 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca06g01168 Cca-Chr6 26066531 26070608 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca06g01168 1 912 Ion Channels AT3G51480 57.503 0.0 1098
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca06g01168 K05387 - gmx:100785258 1625.91
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca06g01168 06 26066531 26070608 Cca06g01168 06 26066531 26070608 ECH
Cca06g01168 06 26066531 26070608 Cca11g00944 11 20025010 20029518 ECH