Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca06g01167 ATGATTAAAGTTTGGCTCTTGGCTTTGATGGTTATCTCCAATGGGTACGCTTCAACTGGGGAGGGCAGGAATAATTCCACAAGACCATATTATGTAAATATTGGGGCTCTCTTCTCTTTTAATACCAGTGTTGGTAGAAGTATACAAATTGCTATAGAAGCTGCAGTTGAAGATGTAAATTCTAATCCAAATATTCTTGGTCAAACCAAGCTGAACCTCTCACTGCAAGAAGATTCAAAGTATAGAGGTTTCCTGAGCATTGTTGAGGTTTTGCAGGTCATGGCAAGAAAAACGGTGGCAATAATTGGCCCTCATAGCTCTGTAACAGCTCATGTCATAACTCATATTGCAAATGAGCTTCAAGTTCCTCTGCTGTCATTTTCAGCTTTGGACCCTACCCTCTCTTCACTTGAATTCCCATTCTTCATTAGAACTTGTCATAGTGATCTTTATCAAATGGCTGCAATAGCAGACCTTGTTGACTACTATGGTTGGAAAGATGTTATTGCTGTCTACATTGATGATGATAATGGGAGAAATGGAATTGGTGCATTAGGTGATAAGCTGGCTGAGAAGCGGTGCAGGATATCATATAAAGCACCTTTGAGCCCCGAAGCATCTCTTGAAGAGATTACTAATGTGCTTGTTCAGGTGGCTCTGGCAGATTCACGGGTAATAGTTGTTCATGCCGATACTCAATGGGGCCCCAAGGTGTTTACTGTTGCAAATAATCTTGGGATGATGAAAGCTGGGTATGTCTGGATAGCCACTGCTTTCCTCTCTTCTCTGCTTGATATCAACAATCCCCTCTCTTCAGAAGCAATGGATGAAATTCAAGGAGTTCTTACACTGCGTATATACACGACAGATtcagagctcaaaaggaggtttgtttctaagtggaaaaacaTGACCAGTGGAAATAATGCTAATGTCCCCCTTGGATTAAGTTTTTTAGCTCTTTATGCATATGACACTATTTATATGCTTGCTCATGGACTTGATGCATTTTTCAAACAAGGTAACCAAATTACTTTCTCAACTGATTCAAAGCTATCTAGCCTACATGGAGACAACTTGCATCTTGATGCCTTGAAAATTTTTAATGAAGGAAATTTATTACGCAATAACATTTATGAGATTAACATGACTGGTGTGTCAGGTCCAATCAAGTATACATCTGACAGAAACCTTGTTAATCCTGCATATGAAATCATTAATGTGGTCGGAACAGGAACTCGAAGGATCGGTTATTGGTCTAATTACTCTGGATTATCAGTTGTTCCTCCAGAAAAACTTCATTCCAAACCAGCCAGTCTTTGCAGGGAAAATCAAAACTTGTTCCCTGTGATTTGGCCTGGAAACACCGTTCAGAGACCTCGCGGTTGGGTTTTTCCAAACAATGGAAGGGTCTTAAAGATTGTAGTACCAAAAAGCGTTAGTTACCCCGAGTTTGTCTCGCAAATAAAAGGCACTCATTTGTTTGAGGGATTCTGCATTGATGTATTTCTTGCTGCAGTTAACCTGCTGTCTTATGCTGTTCCCTATAAGTTCGTCACATATGGAGATGGCAAGAACAATCCTAGTATGACTGAGCTTACTCGTCTGATCACAACGGGTGAATTTGATGGTGCAGTAGGTGACATTGCAATTACTTCAGAAAGAACAAGGATGGTGGATTTTACTCAGCCATATATTGAGTCTGGTCTAGTGGTAGTAGCACCAGTTAGGAGAGCAGAATCTAGTGCTTTGCCCTTTTTGGCCCCGTTTACACCAATGATGTGGTTTGTCATAGCGATCTTTTTCATATTAGTGGGAGCTGTTGTTTGGATTTTGGAGCATAAGGTGAATGATGAATTTAGGGGACCACCCAAAAAACAATTAGTTACTGTTTTATGGTTTAGTTTTTCAACAATGTTCTTTTCCCACCGGGAAAATACAGTGAGCACACTTGGTCGCTTTGTGTTGATCATATGGTTATTTGTAGTTCTTATAATTAACTCAAGTTACACGGCAAGTCTAACCTCAATCCTCACAGTGCAACAGCTTTATTCACCCATTAAAGGCATTGAAAGTTTAGTAAATGGCAAAGAGCCTATTGGGTACAAGCAGGGCTCATTTGCTGGAAATTATTTAGTTCAGGAAATTGGTATCGATGAATCCAGGCTTGTTCCTCTAACAACACCGGAAGAAGCTGCTAAAGCACTGAGAAAGGGTCCCCAAAATGGCGGTGTTGCTGCATACATTGATGAGCGTGCCTACATTGACATCTTCCTCTCCAGCCGTTGTGATTTAACTGTTGTAGGTCAAGAGTTCACTAGAAACGGTTGGGGATTTGCCTTTCCACGAGACTCGCAATTAGCAGTTGACCTGTCAACTTCCATATTGCAAATGATAGATAGTGGAGATTTACAAAGGATCCATGACAAATGGCTTTTAAGTCGAGCTTGCATATCACAGGGTGCAAAGCTAGAAGTGGAAAGACTCCAACTTAAAAGCTTTTGGGGCATCTATGTGATCTGTGGGCTAGCCTGTTTGCTTGCACTCTTCATACATCTTATACATATTTGGAAGCAATACCACAAGCATTACCCAGAGGAACTTCGGTCCACTGACCAAAGGTCAGGATCATCAAGATCTTCACGACTTAAGACTTTCCTTTCATTTGTAGATGAAAAGGAAGAGACCATTAAGAGCCGGTCCAAGAGAAGGAAAAAGGAGAGGATTTCATACAGAAGCATCGAGTCATCCATCAACTCCAATAAGGGGATATGCTTCACGCAGAAGTGA 2790 0.4036 MIKVWLLALMVISNGYASTGEGRNNSTRPYYVNIGALFSFNTSVGRSIQIAIEAAVEDVNSNPNILGQTKLNLSLQEDSKYRGFLSIVEVLQVMARKTVAIIGPHSSVTAHVITHIANELQVPLLSFSALDPTLSSLEFPFFIRTCHSDLYQMAAIADLVDYYGWKDVIAVYIDDDNGRNGIGALGDKLAEKRCRISYKAPLSPEASLEEITNVLVQVALADSRVIVVHADTQWGPKVFTVANNLGMMKAGYVWIATAFLSSLLDINNPLSSEAMDEIQGVLTLRIYTTDSELKRRFVSKWKNMTSGNNANVPLGLSFLALYAYDTIYMLAHGLDAFFKQGNQITFSTDSKLSSLHGDNLHLDALKIFNEGNLLRNNIYEINMTGVSGPIKYTSDRNLVNPAYEIINVVGTGTRRIGYWSNYSGLSVVPPEKLHSKPASLCRENQNLFPVIWPGNTVQRPRGWVFPNNGRVLKIVVPKSVSYPEFVSQIKGTHLFEGFCIDVFLAAVNLLSYAVPYKFVTYGDGKNNPSMTELTRLITTGEFDGAVGDIAITSERTRMVDFTQPYIESGLVVVAPVRRAESSALPFLAPFTPMMWFVIAIFFILVGAVVWILEHKVNDEFRGPPKKQLVTVLWFSFSTMFFSHRENTVSTLGRFVLIIWLFVVLIINSSYTASLTSILTVQQLYSPIKGIESLVNGKEPIGYKQGSFAGNYLVQEIGIDESRLVPLTTPEEAAKALRKGPQNGGVAAYIDERAYIDIFLSSRCDLTVVGQEFTRNGWGFAFPRDSQLAVDLSTSILQMIDSGDLQRIHDKWLLSRACISQGAKLEVERLQLKSFWGIYVICGLACLLALFIHLIHIWKQYHKHYPEELRSTDQRSGSSRSSRLKTFLSFVDEKEETIKSRSKRRKKERISYRSIESSINSNKGICFTQK 929
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca06g01167 929 CDD GluR_Plant 470 812 - -
Cca06g01167 929 Pfam Ligand-gated ion channel 813 845 IPR001320 GO:0015276|GO:0016020
Cca06g01167 929 Gene3D - 148 425 - -
Cca06g01167 929 SUPERFAMILY Periplasmic binding protein-like II 448 814 - -
Cca06g01167 929 Gene3D - 467 583 - -
Cca06g01167 929 Gene3D - 50 400 - -
Cca06g01167 929 Pfam Bacterial extracellular solute-binding proteins, family 3 495 812 IPR001638 -
Cca06g01167 929 SUPERFAMILY Periplasmic binding protein-like I 29 464 IPR028082 -
Cca06g01167 929 CDD PBP1_GABAb_receptor_plant 33 429 IPR044440 -
Cca06g01167 929 Pfam Receptor family ligand binding region 49 410 IPR001828 -
Cca06g01167 929 PIRSF IGluLR_plant 1 927 IPR017103 -
Cca06g01167 929 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 12 918 - -
Cca06g01167 929 SMART GluR_14 471 814 IPR001320 GO:0015276|GO:0016020
Cca06g01167 929 Gene3D - 775 811 - -
Cca06g01167 929 Gene3D - 725 774 - -
Cca06g01167 929 Gene3D - 584 704 - -
Cca06g01167 929 PANTHER GLUTAMATE RECEPTOR 3.6 12 918 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca06g01167 Cca-Chr6 26058067 26063782 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca06g01167 5 910 Ion Channels AT3G51480 57.222 0.0 1100
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca06g01167 K05387 - gmx:100793320 1554.65