Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca06g01166 ATGAAATTTCGCGTTTCAACCTCTCTGCAAACCCTAAtcctctttttcttctttctcttcttcctcGATGGCACCTTCTCCACCTCACAATCCCAACTCTCCCTTCTCTCTCTCCCTCCCTCAGTTAAACAGGCCACGGCCCTCGTCGCCGCCCTCGATGGCACCATGTACTTGGTCGACAGTGTTTCCGGGAGGGTCATTTGGTCTTTTTCCACCGGATCCCCAATCTACCATTCCTATCACGCTCCCATCAATAACCCTAAGGACAACGTTACCGGCCTCATCGAATGCGGCGATGACTGGGAATTAATCGTTCACGACACTCACTTTGGTAAAACGAGGCTCTCTGAATCAATCGCAGATTATGTTGCTTTTACTCCTACGGTAACGAAGGAGGGAGCTGTTGTACTTGGATCCAAAAGAAGCACTGTGTTTGAAGTGAATGCTAGAACTGGAGCGCTTTTTCGAAGCTACTCTGTTTCTGATTTTCATGACAATGCTTCTAGTGTGGTGTCAAGTGATGGTGACGGGAAGCGGGTTAGAACTGCCAAGAATAACGAGCTTGCTGACCCTGCTCAACTGAGTTCACCTCAGTTCTTGCTCAGGATTTTCAGGACGGATTATTTCTTGCAATCGGTTGGTCCAGGAAGTGGATTAGTTTTGTGGACAATGGCTGTGGCTGAATTTAAGGCTGTATTGCTTTGTCAACATAATGAGAATCGTTCTGACGGCGGTTCGTTTGATGCAGAGGATGTGTATGTTTCTGAGAGTGACTTGGATTTTGCTATGCCGTATGCATGTTGGGACAGAAATCTGAAAGAAGTCTACCGCCAACGCAAGAATTTTCTGTTGGAACATGCTGACCTTGAAAGACTGTCTGGGGCTTATCAAGAGAATGATATGCGTACTTCAGAGCTGATGCTTCCATCACAGCCTGATATTGATAGATTTGTCCCTGGTCAAGAAGGTAAAATGATGCTACCTTTGCCTATGCCAAACTCCGTGCCCTTGTTGCCACAAAAAGTCAGCTTCTACGAGAGCAATGATAATGCCGTTGTGCTCCCTCAGCCTCTTATGGAGATTGCTGCCCCAGAGAAAGTTGGTCCAAATAGGGCTATTGAATGGTTGACAGGGTTGCCTCTTATATTATTTACAGTCTTTTTTGGTTTTTTTATCTTCCACTCTCTTGGGGTTAAAAATAAAGTTGTATTAAAAGAGCAAAACAATGAGTTAAGCTCAAAAAGTTTACCTCCTCCCAAGAAGAAGAAAGCAAGAAAGTCAGGAAAGAATAATATCATTGTTGACAAGCAGGATAAACATATATCATTGACTGACGAGGATATACTGTTAGCTGATGGACGCAGGATTGGTAAACTATTTGTATCAAATAAAGAAATTGCTAAGGGAAGTAATGGTACCATTGTCCTTGAAGGGACATACGAAGGCCGAGCAGTTGCTGTCAAACGTCTTGTTCAGGCTCATCATGATGTAGCCCACAAAGAAATCCAAAATCTCATTGCATCCGACAGACATCCAAACATTGTCCGATGGTATGGGATGGAAAGCGATCATGATTTTGTTTACCTTGCTCTGGAGCGCTGTACATGCAACTTGGATGATTTGATTCATATTTATTCTGATATGATTGACAATCCAGCATATAGCAAGGACCAATATTCTAGAATTTTGAAAAATGCTCTGAGGGAGACAGAGACAAATGATATACAATATCTTTGGAAAGCAAATGGCTTTCCATCACCTCTACTACTGAAACTGATGAGGGATGTAGTTTCTGGGCTTGTTCATTTGCATGAACTAGGAATAATACATCGGGATTTGAAACCCCAAAATGTTTTGATAATAAAAGAAAGATCTTTATGTGCAAAGCTTTCTGATATGGGAATTAGCAAACGCCTCCTTGAAGATATGTCTTCTCTGGGTCATAGTACTACTGGCTGTGGCAGTTCAGGTTGGCAAGCACCAGAACAACTTGTTAAAGGACGCCAAACACGAGCGGTAGATTTATTTAGTTTAGGTTGTGTCCTCTTTTTCTGCATGACTGGAGGAAGACATCCATTTGGAGAACGTCTTGAACGTGATATCAATATTGTGAAAAATCAAAAGGACCTTTTCTTAGTGGAGTTCATTCCCGAAGCTGAGGATCTTATTTCTAGTTTGTTAAACCCTAACCCCGATCTAAGGCCAAAAGCTATTGAAGTATTGCATCATCCTCTTTTTTGGAGCTCTGAGATGAGACTTTCATTTCTTCGCGATGTAAGTGACAGGGTGGAACTTGAAGATAGAGAAACTGATTCTGATCTTTTGAAGACACTAGAAAGCAGTGCTCCACTGGCTTTAGGTGCAAAATGGGATGAGAAGCTGGATCCTGATTTCATTACTAACATTGGTCGTTACAGGAGATATAAATTTGACAGTGTTCGAGACTTGTTGAGGGTTGTGAGGAACAAGCTAAATCATTATAGAGAATTGCCTCAAGAAATCCAGGAACTGATAGGACCTGTTCCGGAAGGATTCAATGACTACTTTGCTAGTCGATTCCCAAGGCTCTTGATTGAAGTGTACAAAGTTATATGCAAAAATTGCAAGGATGATGAATGTTTTCAAAGATATTTTAGATACAATAACTAG 2649 0.4153 MKFRVSTSLQTLILFFFFLFFLDGTFSTSQSQLSLLSLPPSVKQATALVAALDGTMYLVDSVSGRVIWSFSTGSPIYHSYHAPINNPKDNVTGLIECGDDWELIVHDTHFGKTRLSESIADYVAFTPTVTKEGAVVLGSKRSTVFEVNARTGALFRSYSVSDFHDNASSVVSSDGDGKRVRTAKNNELADPAQLSSPQFLLRIFRTDYFLQSVGPGSGLVLWTMAVAEFKAVLLCQHNENRSDGGSFDAEDVYVSESDLDFAMPYACWDRNLKEVYRQRKNFLLEHADLERLSGAYQENDMRTSELMLPSQPDIDRFVPGQEGKMMLPLPMPNSVPLLPQKVSFYESNDNAVVLPQPLMEIAAPEKVGPNRAIEWLTGLPLILFTVFFGFFIFHSLGVKNKVVLKEQNNELSSKSLPPPKKKKARKSGKNNIIVDKQDKHISLTDEDILLADGRRIGKLFVSNKEIAKGSNGTIVLEGTYEGRAVAVKRLVQAHHDVAHKEIQNLIASDRHPNIVRWYGMESDHDFVYLALERCTCNLDDLIHIYSDMIDNPAYSKDQYSRILKNALRETETNDIQYLWKANGFPSPLLLKLMRDVVSGLVHLHELGIIHRDLKPQNVLIIKERSLCAKLSDMGISKRLLEDMSSLGHSTTGCGSSGWQAPEQLVKGRQTRAVDLFSLGCVLFFCMTGGRHPFGERLERDINIVKNQKDLFLVEFIPEAEDLISSLLNPNPDLRPKAIEVLHHPLFWSSEMRLSFLRDVSDRVELEDRETDSDLLKTLESSAPLALGAKWDEKLDPDFITNIGRYRRYKFDSVRDLLRVVRNKLNHYRELPQEIQELIGPVPEGFNDYFASRFPRLLIEVYKVICKNCKDDECFQRYFRYNN 882
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca06g01166 882 MobiDBLite consensus disorder prediction 410 429 - -
Cca06g01166 882 Gene3D KEN domain 749 882 IPR038357 -
Cca06g01166 882 Gene3D Transferase(Phosphotransferase) domain 1 565 748 - -
Cca06g01166 882 CDD RNase_Ire1 750 878 - -
Cca06g01166 882 Pfam Ribonuclease 2-5A 752 878 IPR010513 GO:0004540|GO:0006397
Cca06g01166 882 ProSiteProfiles KEN domain profile. 749 880 IPR010513 GO:0004540|GO:0006397
Cca06g01166 882 ProSiteProfiles Protein kinase domain profile. 460 746 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca06g01166 882 SUPERFAMILY Protein kinase-like (PK-like) 453 762 IPR011009 -
Cca06g01166 882 PANTHER SERINE/THREONINE KINASE DOMAIN PROTEIN 24 878 - -
Cca06g01166 882 SUPERFAMILY Quinoprotein alcohol dehydrogenase-like 35 163 IPR011047 -
Cca06g01166 882 Gene3D - 25 259 IPR015943 GO:0005515
Cca06g01166 882 SMART ire1_9 127 159 IPR018391 -
Cca06g01166 882 SMART ire1_9 40 71 IPR018391 -
Cca06g01166 882 ProSitePatterns Serine/Threonine protein kinases active-site signature. 608 620 IPR008271 GO:0004672|GO:0006468
Cca06g01166 882 PANTHER IRE1-RELATED 24 878 IPR045133 GO:0004521|GO:0004674|GO:0030968
Cca06g01166 882 SMART serkin_6 460 746 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca06g01166 882 Pfam Protein kinase domain 462 746 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca06g01166 882 SMART PGNneu 811 865 - -
Cca06g01166 882 Gene3D Phosphorylase Kinase; domain 1 449 532 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca06g01166 Cca-Chr6 26049708 26057086 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca06g01166 486 745 MAP Kinase Kinase Kinase AT3G06030 26.515 2.92e-20 94.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK IRE1 Cca06g01166 Pkinase 2.7e-38 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca06g01166 K08852 - gmx:100785363 1290.4
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca06g01166 06 26049708 26057086 Cca06g01166 06 26049708 26057086 ECH
Cca06g01166 06 26049708 26057086 Cca11g00946 11 20096721 20106912 ECH