Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca06g01161 ATGACGCGCACGCTCAGAATTCTGAAATCGGCGGAGAACGCAACCGCGGTGGCGGCGGCGGCGCCTCCGCCGGAGGCGGTGGCACTGGAGTCGGACTTCGTGGTGATTCTGGCGGCGCTGCTGTGCGCGCTAATATGCGTGGTGGGGCTGGTGGCGGTGGCGCGGTGCGCGTGGCTCCGGCGAGGGTCCGGCGGCGGAGGGTCGGCGATGCAGGCGGCGGCGGCGAACAAGGGCGTGAAGAAGAAGGTGGTGCAGTCGCTGCCGAAGTTCAACTACGTGGACAGCAACCCTAGCAAGTGGGTTGCGACGTCGGAATGCGCGATTTGCCTGGCGGAGTTTGGCGCCGGCGACGAGATCCGCGTGATGCCGCAGTGCGGACACGGCTTCCACGTGACCTGCATCGACACGTGGCTCGGATCTCACTCCTCCTGCCCTTCCTGCCGCCAGGTTCTCATGGCCGCGCGCTGCCAGAAGTGCGGCCGGTTCCCCGCCGCCGGCTCCTCCAGAACGCCGGCGACGGAGCCGGAGTTGAAATCTCGAGAAGACGACAATGCCGCTTCtaatagtaacagtaatcataatagtaccagtGAGATGGAACATCATCATCATCACAGCCACCATGCCAACACTGGGTTCTTGCCCTGA 648 0.6281 MTRTLRILKSAENATAVAAAAPPPEAVALESDFVVILAALLCALICVVGLVAVARCAWLRRGSGGGGSAMQAAAANKGVKKKVVQSLPKFNYVDSNPSKWVATSECAICLAEFGAGDEIRVMPQCGHGFHVTCIDTWLGSHSSCPSCRQVLMAARCQKCGRFPAAGSSRTPATEPELKSREDDNAASNSNSNHNSTSEMEHHHHHSHHANTGFLP 215
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca06g01161 215 MobiDBLite consensus disorder prediction 163 215 - -
Cca06g01161 215 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 67 153 IPR013083 -
Cca06g01161 215 PANTHER ANAPHASE-PROMOTING COMPLEX SUBUNIT 11 RING-H2 FINGER PROTEIN 1 196 - -
Cca06g01161 215 SUPERFAMILY RING/U-box 94 153 - -
Cca06g01161 215 PANTHER RING-H2 FINGER PROTEIN ATL61-RELATED-RELATED 1 196 - -
Cca06g01161 215 Pfam Ring finger domain 105 148 IPR001841 -
Cca06g01161 215 SMART ring_2 106 147 IPR001841 -
Cca06g01161 215 CDD RING-H2_PA-TM-RING 105 148 - -
Cca06g01161 215 ProSiteProfiles Zinc finger RING-type profile. 106 148 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca06g01161 Cca-Chr6 26004103 26005427 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca06g01161 1 182 C3H Transcription Factor Family AT1G76410 55.556 9.30e-63 191
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca06g01161 - - gmx:100787383 297.745
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca06g01161 06 26004103 26005427 Cca06g01161 06 26004103 26005427 ECH
Cca06g01161 06 26004103 26005427 Cca03g00146 03 2101487 2102490 ECH