Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca06g01135 ATGCCACAGAACTGCATAGCACCAAAACCAGAATACTGCGATAGTCATCACTCTGTGGAAGGACCCCAAGAGATGACTGAGCCGCATAACTCAACTGTACTTTCCTATCCCATGCAAACCAATGAAGTGAATGaacaacaacaacaacaacCTTTCCCAAAACTCATTATGTACCCCATAACTCTCAAGTTTGAGGAGTTGGTGTACAAAGTTAAACTAGAGCAGAAAGGAGGGTGCTGGGGCAGTACATGGACTTGCAAGGAAAAGACCATACTTAATGGAATCACTGGTGTGGTGTGTCCAGGAGAAATACTAGCCATGTTGGGACCATCAGGTAGTGGCAAAACCACACTTCTCACAGCACTTGGAGGCCGTCTCAGTGGCAAACTATCCGGTAAGATCACGTACAACGGTCAACCTTTCTCAGGTGCCATCAAAAGAAGGACAGGTTTTGTGGCTCAGGATGATGTGCTATACCCTCATCTCACTGTCACTGAAACTCTAGTGTTCACTGCACTTCTAAGGCTGCCAAATAGCTTGACCCGAGATGAAAAGGTTCAGCATGTGGAGAGAGTGATCACTGAGCTAGGACTGACTCGTTGCAGGAGCAGCATGATAGGAGGTCCACTATTTAGAGGAATATCAGGTGGAGAGAAAAAGAGAGTGAGCATAGGACAAGAAATGCTCATCAACCCTAGCCTCCTCTTACTGGATGAGCCTACTTCAGGTTTGGATTCCACCACGGCACAAAGGATCCTTAACACAATCAAACGCCTAGCTAGTGGGGGTAGAACTGTTGTCACAACTATTCACCAACCCTCTAGTAGGCTCTACTATATGTTTGATAAGGTAGTCTTGCTATCTGAAGGGTGCCCCATATATTATGGTCCTGCTTCAACTGCCTTGGACTACTTCTCATCTGTTGGCTTTTCCACATGTGTGACTGTCAATCCTGCTGATCTCTTGCTTGATCTTGCCAACGGGATTGCCCCGGACTCAAAGCATGCAACTGAACAAAGTGAGGGATTGGAACAGGAGAGGAAGCAGGTGAAAGAATCTCTCATCTTTGCTTATGAGAAGAACATAGCTAGGAGGCTGAAAGATGAGGTTTGCAGCCCGGAAGTGAACAACTGCAACATCACAAAAGATGCTTGTGCAAGAAATTCGATAAAGCAAGAACAATGGTGCACGAGCTGGTGGCATCAGTTCAAAGTACTATTACAAAGGGGAGTGAGGGAGCGAAGGTATGAAGCCTTCAACAGGCTGAGAATATTCCAAGTTGTAAGTGTCGCTTTTCTTGGTGGACTATTGTGGTGGCATACTCCAGAGTCACACATTGAAGACCGGGTTGCCTTGCTCTTTTTCTTTTCTGTTTTCTGGGGATTCTACCCTCTCTACAATGCAGTTTTCACATTCCCTCAAGAGAGGAGAATGCTGATCAAGGAAAGGTCTTCAGGAATGTACCGTCTTTCTTCCTACTTTCTAGCTAGAACAATAGGAGACTTGCCACTGGAGCTAGCACTTCCAACTGCATTTGTCATCATAATCTATTGGATGGGAGGGCTTAAACCTGATCCTATGACTTTTATCCTTTCTCTTCTTGTGGTTCTTTACAGTGTTGTTGTCTCTCAAAGTCTTGGCTTAGCATTTGGTGCTATCTTGATGGAGATTAAACAAGCAACCACTCTAGCTTCAGTGACAACCCTTGTGTTTCTTATTGCTGGGGGATACTATATACAACAGATTCCCCCATTCATAGTCTGGCTCAAGTACTTGAGCTACAGCTACTACTGTTACAAGCTGCTTCTAGGTGTCCAGTACAATGAAAATGACTATTATGAATGCTCAAAGGGGGAGCTGTGCAAGGTTGCAGATTTTCCTCCTATCAAATCAATGGGGTTGAATCATTTGTGGGTTGATGTGTGCATCATGGCCCTTATGTTGGTGGGTTATCGACTAGTTGCTTATTTAGCACTGCACAGGGTTAGGTAG 1992 0.4463 MPQNCIAPKPEYCDSHHSVEGPQEMTEPHNSTVLSYPMQTNEVNEQQQQQPFPKLIMYPITLKFEELVYKVKLEQKGGCWGSTWTCKEKTILNGITGVVCPGEILAMLGPSGSGKTTLLTALGGRLSGKLSGKITYNGQPFSGAIKRRTGFVAQDDVLYPHLTVTETLVFTALLRLPNSLTRDEKVQHVERVITELGLTRCRSSMIGGPLFRGISGGEKKRVSIGQEMLINPSLLLLDEPTSGLDSTTAQRILNTIKRLASGGRTVVTTIHQPSSRLYYMFDKVVLLSEGCPIYYGPASTALDYFSSVGFSTCVTVNPADLLLDLANGIAPDSKHATEQSEGLEQERKQVKESLIFAYEKNIARRLKDEVCSPEVNNCNITKDACARNSIKQEQWCTSWWHQFKVLLQRGVRERRYEAFNRLRIFQVVSVAFLGGLLWWHTPESHIEDRVALLFFFSVFWGFYPLYNAVFTFPQERRMLIKERSSGMYRLSSYFLARTIGDLPLELALPTAFVIIIYWMGGLKPDPMTFILSLLVVLYSVVVSQSLGLAFGAILMEIKQATTLASVTTLVFLIAGGYYIQQIPPFIVWLKYLSYSYYCYKLLLGVQYNENDYYECSKGELCKVADFPPIKSMGLNHLWVDVCIMALMLVGYRLVAYLALHRVR 663
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca06g01135 663 SMART AAA_5 101 291 IPR003593 -
Cca06g01135 663 Coils Coil 333 353 - -
Cca06g01135 663 Gene3D - 81 308 IPR027417 -
Cca06g01135 663 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 62 314 IPR003439 GO:0005524
Cca06g01135 663 CDD ABCG_EPDR 59 296 - -
Cca06g01135 663 ProSitePatterns ABC transporters family signature. 214 228 IPR017871 GO:0005524
Cca06g01135 663 PANTHER ABC TRANSPORTER, G1, P-LOOP CONTAINING NUCLEOSIDE TRIPHOSPHATE HYDROLASE-RELATED 46 661 - -
Cca06g01135 663 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 84 306 IPR027417 -
Cca06g01135 663 Pfam ABC-2 type transporter 271 349 IPR043926 GO:0140359
Cca06g01135 663 PANTHER ABC TRANSPORTER G FAMILY MEMBER 28 46 661 - -
Cca06g01135 663 Pfam ABC-2 type transporter 402 607 IPR013525 GO:0016020|GO:0140359
Cca06g01135 663 Pfam ABC transporter 93 242 IPR003439 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca06g01135 Cca-Chr6 25595403 25598840 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca06g01135 91 291 Calmodulin-binding Proteins AT2G36910 30.189 2.99e-13 71.6
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca06g01135 06 25595403 25598840 Cca06g01135 06 25595403 25598840 ECH