Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca06g01117 ATGAAACATTTTTCTCCCACTTCGCTTGCATTTCGACCCACACATCTCCACTTATTTTCTCTCTTTGCATTGAACTTGCTATGCTTTACACCAAAAATATCTGCTTTTGCTTCAACAAATGAAATCGATAATTTGGCATTACTCAAATTCAAGGAATCTATATCCAGTGACCCATATGAAATTTTCCTTTCTTGGAATACTTCTACTCACTTTTGTAACTGGTTTGGAATCACATGCAATTCCAAGCACCAAAGAGTTACAGAATTGAATTTGGAAAGATACCGATTGAAGGGATCCATATCTCCCTACGTTCCAACTGAAGGTGTCTTTCAAAATGCAAGTGAGTTTATAGTGACTGGAAATAATAAGCTTTGTGGAGGAATTTCAGAATTGTATCTACCACCATGCCCTGTCAACAGTAAAAAACATGAAAAATACCACAAGTTCAGGTTGATAATAGTGATAATTGGTGTGGTTTCTTTTCTTGTTATAATGTCAATTGTTCTGACTATTCTCTTAATGAAGAAAAGGAGTAAGAACCCATCTTTAGAATCACCAACAATTGACCAGCTGGctaaagtttcgtaccaaagcttacacaatggaactgatgggttctcaactacaaacttgatagggtctggaaactttagctctgtctacaaaggatctatcgagttagaagacaaagttgttgccataaaggtcttaaaattgcataaaaaaggagctcacaaaagtttcattattgaatgcaatgcacttaaaaatattaaacatcgaaatttggttcaaattttgacatgttgttcgagcacagattacaaaggtcaagaatttaaagctttaatttttgagtacatgagaaatggaagcttagagcaatggttgcatcccatgacaccaagtgtagagcatccaagaacattgagccttgatcaaagattaaatatcatgattgatgttgcttctgcattgcattatcttcatcacgaatgtgagcaaccgatcattcactgtgatttgaagccaagcaatgttcttcttgatgatgacatgattgctcatgtgagtgattttggcatagcaagacttctctcaaccattaatggaaccacttctaagcaaacaagtacaattggaataaaggggactattggttatgctcctccagagtatggagtgggctctgagATTTTGGACCCACAACTTATTCCAATTGATGAAGCTGCAATATTGGAAGGAAACAATTGGAGTCTTGATCCAAATGTTGAGAAGTGCTTAGTTTCACTTTTTAGGGTTGGACTTGCTTGTTCTATGGAATCACCAAAAGAAAGAATGGATGTGGTTGGTGTTACCGGAGAGCTTAATCGAATTAGAAAAGCCTTTACTGTTGGTGAGAGAATGTGA 1410 0.2043 MKHFSPTSLAFRPTHLHLFSLFALNLLCFTPKISAFASTNEIDNLALLKFKESISSDPYEIFLSWNTSTHFCNWFGITCNSKHQRVTELNLERYRLKGSISPYVPTEGVFQNASEFIVTGNNKLCGGISELYLPPCPVNSKKHEKYHKFRLIIVIIGVVSFLVIMSIVLTILLMKKRSKNPSLESPTIDQLAKVSYQSLHNGTDGFSTTNLIGSGNFSSVYKGSIELEDKVVAIKVLKLHKKGAHKSFIIECNALKNIKHRNLVQILTCCSSTDYKGQEFKALIFEYMRNGSLEQWLHPMTPSVEHPRTLSLDQRLNIMIDVASALHYLHHECEQPIIHCDLKPSNVLLDDDMIAHVSDFGIARLLSTINGTTSKQTSTIGIKGTIGYAPPEYGVGSEILDPQLIPIDEAAILEGNNWSLDPNVEKCLVSLFRVGLACSMESPKERMDVVGVTGELNRIRKAFTVGERM 469
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca06g01117 469 ProSitePatterns Serine/Threonine protein kinases active-site signature. 337 349 IPR008271 GO:0004672|GO:0006468
Cca06g01117 469 PANTHER OS04G0122200 PROTEIN 398 464 - -
Cca06g01117 469 Gene3D Phosphorylase Kinase; domain 1 187 287 - -
Cca06g01117 469 PANTHER LRR RECEPTOR-LIKE KINASE 104 398 - -
Cca06g01117 469 ProSiteProfiles Protein kinase domain profile. 206 469 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca06g01117 469 Gene3D Transferase(Phosphotransferase) domain 1 288 404 - -
Cca06g01117 469 Pfam Protein kinase domain 208 392 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca06g01117 469 PANTHER LRR RECEPTOR-LIKE KINASE 29 104 - -
Cca06g01117 469 SUPERFAMILY Protein kinase-like (PK-like) 179 452 IPR011009 -
Cca06g01117 469 Gene3D Ribonuclease Inhibitor 35 103 IPR032675 -
Cca06g01117 469 PANTHER OS04G0122200 PROTEIN 104 398 - -
Cca06g01117 469 PANTHER LRR RECEPTOR-LIKE KINASE 398 464 - -
Cca06g01117 469 SMART serkin_6 206 463 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca06g01117 469 ProSitePatterns Protein kinases ATP-binding region signature. 212 235 IPR017441 GO:0005524
Cca06g01117 469 Pfam Leucine rich repeat N-terminal domain 43 80 IPR013210 -
Cca06g01117 469 PANTHER OS04G0122200 PROTEIN 29 104 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca06g01117 Cca-Chr6 25344635 25351043 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca06g01117 81 468 Receptor kinase-like Gene Family AT3G47570 43.213 7.15e-102 325
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XII-1 Cca06g01117 Pkinase 1.2e-32 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca06g01117 - - ccaj:109792361 711.449