Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca06g01116 ATGAAACATTTTTTGCCCATGTTACCTGCGTTTTGGTCTATATATGCGCACTTGTTTTCTCTTTTTATTATAAATTCTCTATGGCTTGGCCCAATCATAACTGTCTTGCCATCAGGaaatgagagtgatcatttggtactactcaaattcaaggaatccatatccaccgacccatatggaatctttctctcgtggaatacttccaatcatttttgtaactggcatggaatcacatgtaataccatgcttcaaagagttatagaattgaacttggatggatacaatttgaagggattcatatcacctcacataggcaatctctcttatatgagaaacttcagcctcgcagacaacaatatctacggcaaaatcccacaagaattgggacggttgtcacatctgcaacaactcaatctcagaaataactcattggcaggaaacattcctacaaacttgactggttgtactgaactcaaaaccttaaacttgaggcagaacaatttggttggaaAAATACCGATTGAAATTGGCTCGTTATTTCGGAAGCTTCAAGTTTTGACTGTTGCTAAAAACCAGTTAAGAGGAAGAATCCCATCCTGCATTGGTAATCTCTCATCCCTAACTTTTCTCTCAATAGGTGGAAACAACTTAGAAGGGGATATTCCACAAGAAACATGTCGTCTCAAAACCTTGACATTTTTATCATTTTCTCAGAACAAGTTAACTGGTACAATTCCTTCTTGTCTTTATAATATGTCATCTCTCACTATGATCTCAGCTACAACAAACCGATTTAATGGTTCTCTTCCACCCAACATGTTCCATACCCTCCCTAATCTCCAAGAACTTTATATCGGTGAAAATCAAATTTCTGGTCCAATCCCACCCTCCATCACAAATGCATCTATGTTCTTTTTAGCACTTGAAGCTAGTCGAAACAATCTCATGGGACAAATTCCGAGCTTAGGGAAGCTACAATATCTTGATATCATATCTCTGTCTTGGAACAATCTAGGTAACAATTCAAGTAATGATTTGGAGTTTTTAAAATCATTGACAAACTGTAGTAAGTTGCAACTATTATCTATATCCTACAATAATTTTGGGGGTTATTTGCCAAATTCATTGGGCAATTTATCTACCCAACTTAGTCAACTATTTCTAGGAGGTAACCATATATTGGGAGAAATCCCTGCTACATTAGGAAATTTAATTAGCTTAACTCTTTTGACAATGGAAGATAACAATATTGATGGGAATATCCCAACAACTTTTAGGAAGTTTCAAAAGATGCAACGCTTACGCTTAAGTGGAAACAAGCTGTTAGGAGAGATTGGAGCCTTTGTGGGGAACCTCAGCCAATTGTTTTATCTGGATTTGGGAGAAAATATGTTAGAAGGAAATATTCCTCCAAGTATAGGAATGTGCCAAAAGTTGCAAAGCTTAAATCTTGCCAATAACAACCTTACAGGAACCATACCCTTGGAGATTTTTAAAATTTTCTCTTTAACAAACTTGTTGTCTTTGTCACAAAACTCATTGAGTGGTAGTATACCGGAAGAAGTGGGCAACCTAAAAAATATTGGTTTTATAgatttgtctgaaaatcttttgtccggtcacattcctggaactattggagaatgcattatgttggagaacctttctttgcaagggaattttttacaaggaatcataccatcctccttttcatcactcaaaggtcttcaatatttagacctgtcactaaatcgcttgtctggatcaattcctaatgttttgcaaaatctttctttcttacaatatttcaatgtagcttttaacatgttggatggtgaggtgccaacggaaggtgtctttcgaaatgcaagagggttagtggtgactggaaatagtaagctttgtggaggtgtttcagaactgcatctaccgccttgccttgtcaaaggtaaaaaacttgcaaaacatcacaagttaagattgatagcagtgatagttagtgtgattgcgtgtcttctcataatatcaattattctaactatctactggatgaggaaacggagtaaggaaccatctttggattcaccaacaattgaccaattggctaaagtttcataccaaagcctacataatgcaactgatggattctcaaatgcaaacttgataggatctgggaattttagttttgtctacagagcaactcttgagtttgaagacaaaattgttgccataaaggtcctaaaccttcaaaaaaaaggagcacacaagagtttcattgctgaatgcaatgcacttaaaaatattaaacatcgaaatctagtacaaattttgacatgttgttccagcacagattacaaaggtcaagaatttaaagctctaatttttgagtacatgagcaatggaagcttagagaaatggttgcatcctatgacagtaaatgcaaagcatcctataaccttgaatcttcttcaaagattaaacatcgtgattgatgttgcttctgcattacattatttgcatcatgaatgtgagcaatcaatcattcattgtgatttaaagccaagcaatgttctacttgatgatgacatgattgctcatgtgagtgattttggcatagcaagacttctctcaacaatcaatggttctacttttaagcaaacaagtacaattggagtaaaggggaccgttggttatgctcctccggagtatggaatgggttctgcagtgtctgtgaatggtgacttgtacagtttcggaattcttgtgttggaaatgtttactggaagaaaacccacagatgaaatttttggagatgataaaaatttgcataactttgtggaaaaatcatttcctgataatcttttacagattttggacccaacacttgtcccgacagaaatagaaaATAGTCAAAATCTTACTCCAACCGTTGAACAATGCTTACGTTCACTATTTAATATTGGACTTGCTTGTTCAGTAGAATCAGCAAAAGAAAGAATGAATATGACAGATGTTGGCAAGGAACTCAACAAAATCAGAAATGCTTTTCTTGCCGATAAGGTGAATACACTGGACTAA 3078 0.1602 MKHFLPMLPAFWSIYAHLFSLFIINSLWLGPIITVLPSGNESDHLVLLKFKESISTDPYGIFLSWNTSNHFCNWHGITCNTMLQRVIELNLDGYNLKGFISPHIGNLSYMRNFSLADNNIYGKIPQELGRLSHLQQLNLRNNSLAGNIPTNLTGCTELKTLNLRQNNLVGKIPIEIGSLFRKLQVLTVAKNQLRGRIPSCIGNLSSLTFLSIGGNNLEGDIPQETCRLKTLTFLSFSQNKLTGTIPSCLYNMSSLTMISATTNRFNGSLPPNMFHTLPNLQELYIGENQISGPIPPSITNASMFFLALEASRNNLMGQIPSLGKLQYLDIISLSWNNLGNNSSNDLEFLKSLTNCSKLQLLSISYNNFGGYLPNSLGNLSTQLSQLFLGGNHILGEIPATLGNLISLTLLTMEDNNIDGNIPTTFRKFQKMQRLRLSGNKLLGEIGAFVGNLSQLFYLDLGENMLEGNIPPSIGMCQKLQSLNLANNNLTGTIPLEIFKIFSLTNLLSLSQNSLSGSIPEEVGNLKNIGFIDLSENLLSGHIPGTIGECIMLENLSLQGNFLQGIIPSSFSSLKGLQYLDLSLNRLSGSIPNVLQNLSFLQYFNVAFNMLDGEVPTEGVFRNARGLVVTGNSKLCGGVSELHLPPCLVKGKKLAKHHKLRLIAVIVSVIACLLIISIILTIYWMRKRSKEPSLDSPTIDQLAKVSYQSLHNATDGFSNANLIGSGNFSFVYRATLEFEDKIVAIKVLNLQKKGAHKSFIAECNALKNIKHRNLVQILTCCSSTDYKGQEFKALIFEYMSNGSLEKWLHPMTVNAKHPITLNLLQRLNIVIDVASALHYLHHECEQSIIHCDLKPSNVLLDDDMIAHVSDFGIARLLSTINGSTFKQTSTIGVKGTVGYAPPEYGMGSAVSVNGDLYSFGILVLEMFTGRKPTDEIFGDDKNLHNFVEKSFPDNLLQILDPTLVPTEIENSQNLTPTVEQCLRSLFNIGLACSVESAKERMNMTDVGKELNKIRNAFLADKVNTLD 1025
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca06g01116 1025 ProSitePatterns Protein kinases ATP-binding region signature. 722 745 IPR017441 GO:0005524
Cca06g01116 1025 ProSiteProfiles Protein kinase domain profile. 716 1017 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca06g01116 1025 SUPERFAMILY L domain-like 40 338 - -
Cca06g01116 1025 Pfam Protein kinase domain 718 981 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca06g01116 1025 Gene3D Phosphorylase Kinase; domain 1 697 797 - -
Cca06g01116 1025 Pfam Leucine rich repeat 552 610 IPR001611 GO:0005515
Cca06g01116 1025 SUPERFAMILY L domain-like 381 636 - -
Cca06g01116 1025 Pfam Leucine rich repeat N-terminal domain 41 80 IPR013210 -
Cca06g01116 1025 SMART serkin_6 716 1017 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca06g01116 1025 PANTHER LRR RECEPTOR-LIKE KINASE 28 1018 - -
Cca06g01116 1025 SUPERFAMILY Protein kinase-like (PK-like) 689 1009 IPR011009 -
Cca06g01116 1025 SMART LRR_typ_2 573 596 IPR003591 -
Cca06g01116 1025 SMART LRR_typ_2 452 476 IPR003591 -
Cca06g01116 1025 SMART LRR_typ_2 204 228 IPR003591 -
Cca06g01116 1025 SMART LRR_typ_2 131 155 IPR003591 -
Cca06g01116 1025 SMART LRR_typ_2 477 500 IPR003591 -
Cca06g01116 1025 SMART LRR_typ_2 277 301 IPR003591 -
Cca06g01116 1025 SMART LRR_typ_2 404 427 IPR003591 -
Cca06g01116 1025 Gene3D Transferase(Phosphotransferase) domain 1 798 1022 - -
Cca06g01116 1025 PANTHER OS04G0122200 PROTEIN 28 1018 - -
Cca06g01116 1025 ProSiteProfiles Leucine-rich repeat profile. 575 598 IPR001611 GO:0005515
Cca06g01116 1025 ProSitePatterns Serine/Threonine protein kinases active-site signature. 847 859 IPR008271 GO:0004672|GO:0006468
Cca06g01116 1025 Gene3D Ribonuclease Inhibitor 36 101 IPR032675 -
Cca06g01116 1025 Gene3D Ribonuclease Inhibitor 102 342 IPR032675 -
Cca06g01116 1025 Gene3D Ribonuclease Inhibitor 343 653 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca06g01116 Cca-Chr6 25282531 25287650 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca06g01116 40 1023 Receptor kinase-like Gene Family AT3G47570 45.829 0.0 833
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XII-1 Cca06g01116 Pkinase 3e-40 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca06g01116 - - gmx:102664380 1514.98