Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca06g01110 ATGGAGGCCCAAGAAGGCACGAAGCAGAGCAGGTGGCAGGAGGGGTCGTTTACGTTGGGCCAGTTCATTTCAGAAACAGAAAACGGCGTTGAGTTTATAAACGACGACGGTTCAGCACAAGATCTCGACCCTCAGAGCGACCACAGCTCCGATTActtagcccaccctaacactcacccccaacctcaccctcagcctcgccgtcCGCGCGGCTTCGCGGCGGCGACGGCGTCCGGCGCCAATTCCGCCGCCAAGGGGAAGAAGGAGAGAGAAAAGGAGAAGGAGCGCACGAAGCTCCGCGAGCGACACCGCCGAGCCATCACCAGCCGCATGCTCGCCGGCCTCCGCCAGTACGGCAATTTCCCCCTCCCGGCGCGTGCCGACATGAACGACGTACTCGCCGCGCTCGCGCGTGAGGCTGGCTGGGTCGTCGACGCCGATGGCACCACCTACCGCCACTGCCCCCCTCCTTCTCACATGGGGTCACTTGCGGCTAGGTCAGTTGAAAGTCAACTCTCTGGTGGTTCTTTGAGAAATTGCTCGGTTAAGGAAACGATTGAGAATCAGACATCTGTGCTTAGAATTGATGAATGTTTGTCGCCTGCTTCCATTGATTCAGTTGTAATTGCAGAAAGGGACTCAAAGAATGAAAAATATACAAATGCTACCCCCATCAATACAGTTGACTGCTTGGAGGCTGATCAGCTTATGCAAGATATTCATTCTGGGGTGCATGAAAATGACTTCACTGGCACACCTTATGTTCCTGTTTATGCAAAGCTTCCGGCTGGTATTATTAACAAATTTTGCCAGTTGATTGATCCTGAAGGCATTAAGCAGGAGCTAATCCATATCAAGACTTTAAATATAGATGGTGTTGTTGTGGATTGTTGGTGGGGCATTGTTGAAGCCTGGAGCTCACAGAAATATGTGTGGTCTGGTTATAGGGAGCTTTTTAACATGATTAGAGAATTCAAACTGAAGTTACAGGTTGTTATGGCATTTCATGAATGTGGAGGGAATGATTCTAGTGATGCATTGATCTCCCTCCCACAATGGGTTTTGGATATTGGAAAAGACAATCAGGATATATTCTTCACAGATCGTGAAGGACGGAGGAATACTGAATGCCTTTCGTGGGGGATTGACAAAGAGAGAGTTCTCAAGGGAAGAACTGGAATTGAGGTCTATTTTGATATGATGAGAAGCTTTCGGACAGAGTTTGATGACCTGTTCGCAGAAGGTCTGATTTCTGCTGTAGAAATTGGTCTTGGAGCATCTGGGGAGCTGAAATATCCTTCTTTCTCAGAAAGAATGGGATGGAGGTATCCTGGTATCGGTGAGTTTCAGTGCTATGACAAATATCTACAACATAGTCTGCGCAGAGCAGCCAAATTACGGGGTCACTCTTTCTGGGCTAGAGGACCTGATAATGCTGGACATTACAATTCTATGCCACATGAAACTGGATTCTTTTGTGAGCGAGGTGATTATGACAACTATTATGGACGCTTCTTCTTACATTGGTACTCCAAGACATTAATAGACCATGCAGATAATGTTTTGTCTCTTGCAACCCTTGCTTTTGAGGAAACAAAAATAATTGTCAAGGTTCCTGCTGTATACTGGTGGTATAAAACTCCTAGTCATGCAGCAGAGTTGACAGCAGGATATCACAATCCAACAAATCAGGATGGATACTCTCCCTTGTTTGAGGTTCTGAGAAAGCATGCGGTCACCATGAAATTTGTCTGCTTAGGATTTCATCTTTCCAGCCAGGAAGCTAATGAATCATTAATTGACCCAGAGGGTTTGAGTTGGCAGGTGCTAAACTCAGCTTGGGATCGTGGATTGATGGCTGTTGGAGAGAATGCACTCCTTTGCTATGATAGAGAAGGGTACAAGAGATTAGTTGAGATGGCAAAGCCCAGAAATGATCCCGATCGACGACACTTCTCATTCTTTGTTTATCAGCAACCATCTTTGCTGCAGGCAAATGTTTGCTTGTCCGAATTGGACTTCTTCATCAAATGCATGCATGGTGAGATGACAGATCTGTAA 2061 0.4546 MEAQEGTKQSRWQEGSFTLGQFISETENGVEFINDDGSAQDLDPQSDHSSDYLAHPNTHPQPHPQPRRPRGFAAATASGANSAAKGKKEREKEKERTKLRERHRRAITSRMLAGLRQYGNFPLPARADMNDVLAALAREAGWVVDADGTTYRHCPPPSHMGSLAARSVESQLSGGSLRNCSVKETIENQTSVLRIDECLSPASIDSVVIAERDSKNEKYTNATPINTVDCLEADQLMQDIHSGVHENDFTGTPYVPVYAKLPAGIINKFCQLIDPEGIKQELIHIKTLNIDGVVVDCWWGIVEAWSSQKYVWSGYRELFNMIREFKLKLQVVMAFHECGGNDSSDALISLPQWVLDIGKDNQDIFFTDREGRRNTECLSWGIDKERVLKGRTGIEVYFDMMRSFRTEFDDLFAEGLISAVEIGLGASGELKYPSFSERMGWRYPGIGEFQCYDKYLQHSLRRAAKLRGHSFWARGPDNAGHYNSMPHETGFFCERGDYDNYYGRFFLHWYSKTLIDHADNVLSLATLAFEETKIIVKVPAVYWWYKTPSHAAELTAGYHNPTNQDGYSPLFEVLRKHAVTMKFVCLGFHLSSQEANESLIDPEGLSWQVLNSAWDRGLMAVGENALLCYDREGYKRLVEMAKPRNDPDRRHFSFFVYQQPSLLQANVCLSELDFFIKCMHGEMTDL 686
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca06g01110 686 MobiDBLite consensus disorder prediction 1 56 - -
Cca06g01110 686 PANTHER - 89 684 IPR001554 GO:0000272|GO:0016161
Cca06g01110 686 SUPERFAMILY (Trans)glycosidases 249 683 IPR017853 -
Cca06g01110 686 PANTHER BETA-AMYLASE 8 89 684 - -
Cca06g01110 686 MobiDBLite consensus disorder prediction 84 101 - -
Cca06g01110 686 Pfam BES1/BZR1 plant transcription factor, N-terminal 85 231 IPR008540 -
Cca06g01110 686 MobiDBLite consensus disorder prediction 1 101 - -
Cca06g01110 686 PRINTS Beta-amylase (glycosyl hydrolase family 14) signature 549 560 IPR001554 GO:0000272|GO:0016161
Cca06g01110 686 PRINTS Beta-amylase (glycosyl hydrolase family 14) signature 605 627 IPR001554 GO:0000272|GO:0016161
Cca06g01110 686 PRINTS Beta-amylase (glycosyl hydrolase family 14) signature 289 303 IPR001554 GO:0000272|GO:0016161
Cca06g01110 686 PRINTS Beta-amylase (glycosyl hydrolase family 14) signature 567 590 IPR001554 GO:0000272|GO:0016161
Cca06g01110 686 PRINTS Beta-amylase (glycosyl hydrolase family 14) signature 332 353 IPR001554 GO:0000272|GO:0016161
Cca06g01110 686 PRINTS Beta-amylase (glycosyl hydrolase family 14) signature 425 447 IPR001554 GO:0000272|GO:0016161
Cca06g01110 686 PRINTS Beta-amylase (glycosyl hydrolase family 14) signature 532 548 IPR001554 GO:0000272|GO:0016161
Cca06g01110 686 PRINTS Beta-amylase (glycosyl hydrolase family 14) signature 498 517 IPR001554 GO:0000272|GO:0016161
Cca06g01110 686 PRINTS Beta-amylase (glycosyl hydrolase family 14) signature 310 328 IPR001554 GO:0000272|GO:0016161
Cca06g01110 686 Pfam Glycosyl hydrolase family 14 274 648 IPR001554 GO:0000272|GO:0016161
Cca06g01110 686 Gene3D Glycosidases 245 686 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca06g01110 Cca-Chr6 25234702 25241293 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca06g01110 43 685 Glycoside Hydrolase AT5G45300 65.476 0.0 881
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF BES1 Cca06g01110 Glyco_hydro_14 2e-87 CL0058
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca06g01110 K01177 - gmx:100777004 1258.05
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca06g01110 06 25234702 25241293 Cca06g01110 06 25234702 25241293 ECH