Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca06g01109 ATGGGGTCCAGTGGAAGCAAAGCCACGTCATCGTCGTCGTCTTCGGGTAGTTTCAGGAAGGGTCGATCTAAGGGGCACAGAGGCTTCCCATCCTATTGCCTCGGAACAACCTCTGGATCTCGTGACATTGATTGTGACGACCAGGTTTGTGATCAGAGTAAAGTAAATGGAGATGATGAGACATACACCAGTGGCAATGAAATAGACTCGGATGAAGGGAAGACTGAGTCTTTTAGAAAGGTTAAATCTGATGAAGTGCCTTGTGTGCCTTCTAACATTGACCTTGAGGAGTGGGGTCCCACTGCATCCAGAACTGGCAGCAGCTCTGCTCATTCTTCTTCAAATCGGTCCTTGAATACTTCAAACGGATTCCTTTCTCGCTTTAGCCTTGTTCCTGGTAATATAAGCTTCAGACTTAGCAGAACCACAAGTTTGGGGTCATCTAGGCCTTGCCCTGTATCTTCAGCGGGTCTCTCAATTTTCAACAATGAAGATGAGCTTAATCTGCATCAAAGGCCTGCTAGTGGCTTGATTAATAGAAATGAAACTCAGCACCGTAGCAACTTGCTTAATTCATCTTTTGTTAGCCAAGTGCCTATACAGTGCCATGAAGAAGGATCTAATAATTTAAGACCTAACACCCCAGCATTGGTTTCACCAGGCAACTTGCTTAGCAGTCGCACACGTTCTTCTGTCCAAGATGTGGTTAGAGATGGTGATGGTACAAGAGAAGTGCCGGATGTGAACTTCTATTCTCCAAGAATTCATACTGATACAGAAAATTTTGAGACTAGACATACCGATAGACGAAATGGAGCCCGAGAACCTGTTGAACGTAATGTACGATTTAGCCGAACTTTAAGTGTTGGAAGGCTCCGTGACAGAGTTCTCCGCCGATCAACATTATCAGACTTCACCATTTGCCCTCTGCAACGAGAGAGAGAAGTAAGAGATGCTAGTCAAGATAATGGAAGACGAGCAGGGGAGAGAGACACCAGAGTGTCACCATCTGGTCGTAATGCTGCAAATTCTTCAACACCTAGATATCCTCAACCCAGTACACCTAGCTCCTTGTTTGGCATCCAAGACTATGAAGTTGAGACTTCACGATCTAGAGAAACTAGGTATCAGGATTTACTGGAACATAGATCTAATTTCCTTGAAAGGAGAAGAAGAATACGATCTCAGGTCCGTGCTCTTCAGCGGTTGGGTAGTCGGTTTGAAAATCTTTCTGGACATGACAGATCATGTATCTTGTCTGGTCAACATAGAAATGGTCGTTGTGCATGCCGAATCGGTAGTCGTGATACCAATTCAAATGATGATACCAATGCTAGAGCTAGCATATCAAGAATTGTTATGCTAGCTGAAGCCTTATTTGAGGTTCTGGATGAAATTCACCAGCAATCTGTAGTTTTATCTTCTCGCCCTTCTGTGTCATCTATCGGTTCTGTTCCTGCACCTAATGAAGTTGTGGAATCCCTGCCTGTCAAATTATACACAAAGTTGCACAAACATCAAGAAGATCCTGTGCAATGTTATATATGCCTTGTGGAGTATGAGGATGGAGACAGCATGCGAGTTCTGCCTTGTCATCATGAATTTCATACAACATGTATAGACAAGTGGCTGAAGGAGATTCACAGGGTGTGCCCACTATGTCGAGGGGATATCTGTGTATCTGATTCACTGCCGACAGAGAACTAA 1707 0.4417 MGSSGSKATSSSSSSGSFRKGRSKGHRGFPSYCLGTTSGSRDIDCDDQVCDQSKVNGDDETYTSGNEIDSDEGKTESFRKVKSDEVPCVPSNIDLEEWGPTASRTGSSSAHSSSNRSLNTSNGFLSRFSLVPGNISFRLSRTTSLGSSRPCPVSSAGLSIFNNEDELNLHQRPASGLINRNETQHRSNLLNSSFVSQVPIQCHEEGSNNLRPNTPALVSPGNLLSSRTRSSVQDVVRDGDGTREVPDVNFYSPRIHTDTENFETRHTDRRNGAREPVERNVRFSRTLSVGRLRDRVLRRSTLSDFTICPLQREREVRDASQDNGRRAGERDTRVSPSGRNAANSSTPRYPQPSTPSSLFGIQDYEVETSRSRETRYQDLLEHRSNFLERRRRIRSQVRALQRLGSRFENLSGHDRSCILSGQHRNGRCACRIGSRDTNSNDDTNARASISRIVMLAEALFEVLDEIHQQSVVLSSRPSVSSIGSVPAPNEVVESLPVKLYTKLHKHQEDPVQCYICLVEYEDGDSMRVLPCHHEFHTTCIDKWLKEIHRVCPLCRGDICVSDSLPTEN 568
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca06g01109 568 SUPERFAMILY RING/U-box 491 561 - -
Cca06g01109 568 MobiDBLite consensus disorder prediction 315 362 - -
Cca06g01109 568 SMART ring_2 513 554 IPR001841 -
Cca06g01109 568 MobiDBLite consensus disorder prediction 67 83 - -
Cca06g01109 568 MobiDBLite consensus disorder prediction 101 118 - -
Cca06g01109 568 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 1 568 - -
Cca06g01109 568 MobiDBLite consensus disorder prediction 1 19 - -
Cca06g01109 568 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 1 568 - -
Cca06g01109 568 CDD RING-H2_PA-TM-RING 512 555 - -
Cca06g01109 568 MobiDBLite consensus disorder prediction 1 118 - -
Cca06g01109 568 Pfam Ring finger domain 512 555 IPR001841 -
Cca06g01109 568 MobiDBLite consensus disorder prediction 315 333 - -
Cca06g01109 568 MobiDBLite consensus disorder prediction 222 249 - -
Cca06g01109 568 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 476 560 IPR013083 -
Cca06g01109 568 MobiDBLite consensus disorder prediction 336 362 - -
Cca06g01109 568 ProSiteProfiles Zinc finger RING-type profile. 513 555 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca06g01109 Cca-Chr6 25222030 25227155 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca06g01109 232 562 C3H Transcription Factor Family AT5G45290 62.832 2.75e-120 364
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca06g01109 - - gmx:100786091 947.962
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca06g01109 06 25222030 25227155 Cca06g01109 06 25222030 25227155 ECH