Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca06g01108 ATGCACACTTGCATCAAATCAGGTCCAAAAACTCGAATGATGTTTTTCACGGACACGGAATTAAGGAAGGTGTGGCAGAGACCACCCATCATCACCCACAATTGGCATTCATTAACGAACCTCCTTCATTGTTACACCATCTCGTTTTCCCAATCCATTCTCCATCTCAGAATGGAGAGTGCAAGAATAAGCCAGTGGTTGAACCTTCTGGTGTGTGCATTGTTGTTGTTGATAGCTGAAGCTTCGTATGTGCCAATCACTTTTGTAAGGAACGCTGTAGCAAAAGGAGCTGTTTGTTTGGATGGGAGTCCACCTGCTTACCATTTTGATAAGGGATTTGGAACAGGGATTAACAGTTGGTTAGTTGCATTTGAGGGAGGAGGATGGTGCAACAATGTCACTACTTGCCTTTCTCGCAAGACCTATCGTTTAGGTTCATCTAAGCAAATGGCCAGGCAAATTGGCTTTTCAGGAATTTTGAGTAACAGGAGACTGTTTAATCCAGATTTCTACAACTGGAACAGAATCAAGGTTAGGTACTGTGATGGTTCATCATTTACCGGTGATGTGGAAGCAGTGAATCCAGTAACGAAGTTGCACTTCAGAGGAGCAAGGATTTTCGCTGCTGTCATGGAGGATTTACTAGCAAAAGGAATGAAAAATGCTCAAAATGCTATTATCTCTGGATGTTCAGCTGGAGGATTAACTTCAGTACTACATTGTGATCGATTCCGAGCTTTATTACCTACAGGGGCTAGAGTGAAATGCCTCTCAGATGCTGGTTACTTTATCAACGCAAAGGATGTCTTGGGAGAACAACACATCGAACAATACTTCAGTCAAATTGTTGCCCTACATGGCTCTGCAAGGAATTTGCCTCAATCTTGCACTTCAAGACTTAGCCCAAGGCTGTGCTTTTTCCCACAATATTTGGTGTCTCATATCACTACGCCAATCTTCTTTGTAAATGCGGCATACGACTCATGGCAGATTAAGAACATTTTGGCACCGGGTGTTGCTGATCCTCAAGGCCATTGGCACAGCTGCAAGCTTGATATAAACAACTGCTCACCTGATCAACTCGATCTAATGCAAGGCTTTAGGACAGAATTCTTAAGGGCTTTGACTGTGCTAGGCAACTCTTCATCTAAAGGAATGTTCATAGACTCTTGTTACACCCATTGCCAAACTGAAATGCAGGAGACATGGTTGAGAAGTGACTCTCCAGTGCTGGCCAAGACAACAATTGCAAAGGCCGTAGCAGACTGGTTTTATGAAAGAAGACCTTTCCATCAGATAGATTGCCCTTACCCTTGCAATCCCACTTGTCACAACCGCGTTCTCGATCCACCACAAGACCACCCAGATAAAAATGTGACCACGAAAGGAACAACGTCAGATGCATCAGCCAGAAAGCCCAATTTTCCCAAACTAACAAACAAGGCACGATGGATTGAACTTGTGTGCACTAAACGTGGGATCGGTGGGCTTCTACTAACGTTGGTTATTCTGGACATCCTATAA 1524 0.4377 MHTCIKSGPKTRMMFFTDTELRKVWQRPPIITHNWHSLTNLLHCYTISFSQSILHLRMESARISQWLNLLVCALLLLIAEASYVPITFVRNAVAKGAVCLDGSPPAYHFDKGFGTGINSWLVAFEGGGWCNNVTTCLSRKTYRLGSSKQMARQIGFSGILSNRRLFNPDFYNWNRIKVRYCDGSSFTGDVEAVNPVTKLHFRGARIFAAVMEDLLAKGMKNAQNAIISGCSAGGLTSVLHCDRFRALLPTGARVKCLSDAGYFINAKDVLGEQHIEQYFSQIVALHGSARNLPQSCTSRLSPRLCFFPQYLVSHITTPIFFVNAAYDSWQIKNILAPGVADPQGHWHSCKLDINNCSPDQLDLMQGFRTEFLRALTVLGNSSSKGMFIDSCYTHCQTEMQETWLRSDSPVLAKTTIAKAVADWFYERRPFHQIDCPYPCNPTCHNRVLDPPQDHPDKNVTTKGTTSDASARKPNFPKLTNKARWIELVCTKRGIGGLLLTLVILDIL 507
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca06g01108 507 PANTHER PECTIN ACETYLESTERASE 60 464 - -
Cca06g01108 507 MobiDBLite consensus disorder prediction 448 474 - -
Cca06g01108 507 SUPERFAMILY alpha/beta-Hydrolases 198 329 IPR029058 -
Cca06g01108 507 Pfam Pectinacetylesterase 79 428 IPR004963 GO:0016787
Cca06g01108 507 MobiDBLite consensus disorder prediction 457 473 - -
Cca06g01108 507 PANTHER NOTUM-RELATED 60 464 IPR004963 GO:0016787
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca06g01108 Cca-Chr6 25210640 25221337 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca06g01108 62 455 Carbohydrate Esterase AT4G19420 62.471 0.0 580
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca06g01108 K19882 - gmx:100776478 827.78
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca06g01108 06 25210640 25221337 Cca06g01108 06 25210640 25221337 ECH