Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca06g01105 ATGGAAAATTTTTCTCCCTTGCTTGCATTTTGGTCTATATATCTTCATCTGTTTTCTCTCCTTACATTAAACTTGCTATGGGTTAGCTCAAATGTGATTGTTTTTGCATCAGGAAATGAGATTGACCATTTAGCTCTTCTCAAATTCAAAGAGTCTGTATCCACTGACCCATCTGGAATTTTCCTCTCTTGGAATTCTTCTTCTCACTTCTGTAACTGGCATGGAGTCACATGCAATCCCGTGCTTCAAAGAGTCACAGAGTTGAATTTGCAAGGATACAAGTTGAAGGGAACTATTTCTCCCCACGTGGGCAACCTCTCTTATATGAGAAGCTTCAACCTCGGAGACAACAACTTCTATGGAAAAATCCCCCAAGAATTGGGACGTTTGTTTCAACTACAAAACCTCTCTGTTGCAAATAACTCATTGATAGGAGAAATTCCTACAAACTTGACAGGTTGCACTCATCTCAAAATCTTACGATTATATGGGAACAATCTGATCGGAAAAATACCCATCCAAATTGGCTCACTTCGGAAGCTTACAGAGTTGAGCCTTTACATGAACCAGTTGACGGGACGAATTCCGTCATTTGTAGGGAATCTTTCAGCCCTAATTCATTTCTCGTTGTCTAACAACAAGTTTGAGGGAAATATTCCACAAGAAATATGTCGTCTCAAAAACTTGACATTTTTAGCATTAGGTGTCAACAAACTGACGGGAGCATTTCCTTCTTGTCTTTATAATATGTCATCTCTTACTCTAATCTCAGCTCCACAAAATCAATTAAATGGATCTCTTCCCCCCAACATGTTCCACACCCTCCCCAATCTCCAACTACTCGCAATTGAGATCAATCAAATCTCAGGTCCAATCCCACCTTCCATCACTAATGCATCTAACCTTTTAGTACTTAGTATTAGTGAAAATCATTTTGTTGGTCAAGTTCCAATTTTGGGGCGGCTACAAGATCTTCAATATCTATCTTTGTTCAGGAACAATTTAGGAGACAATTCAACTAATGATTTGGAGTTTTTAAAATCATTGACAAATTGTAGTATGTTGAATAGGTTAGATATAGGTTACAATAACTTTGGAGGTCATTTGCCAAATTCCTTAGGCAATTTATCCGCGCAACTTAGTCTACTACATCTTGGAGTTAATGAAATATTTGGAGAAATCCCTGCATCATTAGGAAATCTAATTGGCTTAACTCTCTTGACGATGGAAGAAAACCACATTAGTGGGATTATCCCAACAACTTTTGGGAAGTTTCAGAATATGCAAGTGTTAGACTTAAATGCAAACAAGTTGTCAGGAGAAATAGGGACCTTCATAGGAAACTTTAGTCAATTGTTTCATTTAGGTATGGGGGGGAATATGTTAGAAGGAAAAATTCCTCCAAGTATTGGAAACTGCCAAAAGTTACAACATCTAGATCTTTCGCACaacaatcttagaggaaccatacccgtagaggtttttagtctttcctctttaacaaccatgttgaatttgtcacaaaactcattgaatgatactatatcggaagaagtgggcagcctaaaaaatctcattgtgttggatgtgtctgagaatcatctgtctggtcaaattcctggaactattggagaatgcatgatgttagagtacctctatttacaaggaaattatttacaaggaatcatatcatcctctttggcttcactcaaaggtcttcaacatttagacttatcacgaaaccacttgtctggttcaattccaaatgttctgcaaaacatttctttcttagaatatttcaatgtatcttttaacatgttggttggtgaggtaccaaatggaggtgtctttcaaaatgcaagtgggttagtggtgactggaaatactaagctctgtggaggtatttctaaactgcatctaccaccatgccctgtcaaacttaaaaaactttcaaaacacaagttcatgttgatagcaatggtagttagtgcggttgtctttcttctcatactgtcagttattctaactatctactggatgaggaagaggagtaaaaaatcaactttggattcaccaagaattgaccaactggctaaagtttcataccaaagcctacacaatggaactaatgggttctcaactacaaacttgatagggtctggaaattttagctctgtctacaaaggaactcttgagttagaaaataatgttgttgccattaaggtcctaaatcttcagaaaacaggagctcacaagagtttcatagttgaatgcaatgcactcaagaatattaaacatcgaaatttggttaagattttgacatgttgttccagcacagattacaaaggtcaagaatttaaagctctaatttttgagtacatgagaaatggaagcttagagcaatggttgcatccaaggatactaagtggagagcactcaagaacattaaaccttgatcaaagattaaacatcatgattgatgttgcttttgcattacattatcttcatcatgaatgtgagcaatcgatcattcattgtgatttaaagccaagcaatgtccttcttaatgaagatatgattgctcatgtgagtgattttggcatagcaagacttctctccaccatcagtggtacaacttataagcaaacaagcacgattggaataaaggggactgttggctatgctcctccagagtatggaatgggttttgagattttggacccacaccttattcCAACACATGAAATGATTGCATTCAAAGGAAATGATTGGAATCTTAATCCAAATATTGAGAAGTGTTTAGTTTCACTTTTTAGGATTGGACTTGCTTGTTCTATGGAATCACCAAATGAAAGAATGAATGTGGTTGATGTCACTAGGGAGCTTAATCGAATTAGGAAGCTCTTTCTTGTTGGTGTTGACACTTGA 2928 0.2107 MENFSPLLAFWSIYLHLFSLLTLNLLWVSSNVIVFASGNEIDHLALLKFKESVSTDPSGIFLSWNSSSHFCNWHGVTCNPVLQRVTELNLQGYKLKGTISPHVGNLSYMRSFNLGDNNFYGKIPQELGRLFQLQNLSVANNSLIGEIPTNLTGCTHLKILRLYGNNLIGKIPIQIGSLRKLTELSLYMNQLTGRIPSFVGNLSALIHFSLSNNKFEGNIPQEICRLKNLTFLALGVNKLTGAFPSCLYNMSSLTLISAPQNQLNGSLPPNMFHTLPNLQLLAIEINQISGPIPPSITNASNLLVLSISENHFVGQVPILGRLQDLQYLSLFRNNLGDNSTNDLEFLKSLTNCSMLNRLDIGYNNFGGHLPNSLGNLSAQLSLLHLGVNEIFGEIPASLGNLIGLTLLTMEENHISGIIPTTFGKFQNMQVLDLNANKLSGEIGTFIGNFSQLFHLGMGGNMLEGKIPPSIGNCQKLQHLDLSHNNLRGTIPVEVFSLSSLTTMLNLSQNSLNDTISEEVGSLKNLIVLDVSENHLSGQIPGTIGECMMLEYLYLQGNYLQGIISSSLASLKGLQHLDLSRNHLSGSIPNVLQNISFLEYFNVSFNMLVGEVPNGGVFQNASGLVVTGNTKLCGGISKLHLPPCPVKLKKLSKHKFMLIAMVVSAVVFLLILSVILTIYWMRKRSKKSTLDSPRIDQLAKVSYQSLHNGTNGFSTTNLIGSGNFSSVYKGTLELENNVVAIKVLNLQKTGAHKSFIVECNALKNIKHRNLVKILTCCSSTDYKGQEFKALIFEYMRNGSLEQWLHPRILSGEHSRTLNLDQRLNIMIDVAFALHYLHHECEQSIIHCDLKPSNVLLNEDMIAHVSDFGIARLLSTISGTTYKQTSTIGIKGTVGYAPPEYGMGFEILDPHLIPTHEMIAFKGNDWNLNPNIEKCLVSLFRIGLACSMESPNERMNVVDVTRELNRIRKLFLVGVDT 975
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca06g01105 975 PANTHER OS04G0122200 PROTEIN 27 904 - -
Cca06g01105 975 SUPERFAMILY Protein kinase-like (PK-like) 688 962 IPR011009 -
Cca06g01105 975 SUPERFAMILY L domain-like 41 335 - -
Cca06g01105 975 PRINTS Leucine-rich repeat signature 476 489 - -
Cca06g01105 975 PRINTS Leucine-rich repeat signature 570 583 - -
Cca06g01105 975 PANTHER LRR RECEPTOR-LIKE KINASE 27 904 - -
Cca06g01105 975 ProSiteProfiles Leucine-rich repeat profile. 475 497 IPR001611 GO:0005515
Cca06g01105 975 Gene3D Ribonuclease Inhibitor 337 644 IPR032675 -
Cca06g01105 975 Pfam Leucine rich repeat N-terminal domain 42 79 IPR013210 -
Cca06g01105 975 ProSitePatterns Protein kinases ATP-binding region signature. 718 741 IPR017441 GO:0005524
Cca06g01105 975 Pfam Leucine Rich Repeat 475 491 IPR001611 GO:0005515
Cca06g01105 975 Gene3D Ribonuclease Inhibitor 39 319 IPR032675 -
Cca06g01105 975 ProSiteProfiles Protein kinase domain profile. 712 975 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca06g01105 975 SUPERFAMILY L domain-like 379 633 - -
Cca06g01105 975 Gene3D Phosphorylase Kinase; domain 1 693 793 - -
Cca06g01105 975 ProSitePatterns Serine/Threonine protein kinases active-site signature. 843 855 IPR008271 GO:0004672|GO:0006468
Cca06g01105 975 PANTHER OS04G0122200 PROTEIN 905 970 - -
Cca06g01105 975 Pfam Leucine rich repeat 549 607 IPR001611 GO:0005515
Cca06g01105 975 SMART serkin_6 712 969 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca06g01105 975 SMART LRR_typ_2 178 200 IPR003591 -
Cca06g01105 975 SMART LRR_typ_2 130 154 IPR003591 -
Cca06g01105 975 SMART LRR_typ_2 473 497 IPR003591 -
Cca06g01105 975 SMART LRR_typ_2 522 546 IPR003591 -
Cca06g01105 975 SMART LRR_typ_2 570 593 IPR003591 -
Cca06g01105 975 SMART LRR_typ_2 401 424 IPR003591 -
Cca06g01105 975 SMART LRR_typ_2 202 226 IPR003591 -
Cca06g01105 975 Pfam Protein kinase domain 714 898 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca06g01105 975 PANTHER LRR RECEPTOR-LIKE KINASE 905 970 - -
Cca06g01105 975 Gene3D Transferase(Phosphotransferase) domain 1 794 969 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca06g01105 Cca-Chr6 25146992 25184255 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca06g01105 39 975 Receptor kinase-like Gene Family AT3G47570 43.750 0.0 760
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XII-1 Cca06g01105 Pkinase 4.1e-32 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca06g01105 - - gmx:100801459 1424.45