Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca06g01102 ATGAAGCAGAAGCCATCAAAGCCATGGAGACCCTTCACTTCAAACTGCTGCACCACAGAGGACCAAACCATCTTCAGAAACTTTAGCAGGTGCAAGCCATCGCGCTCCGATTTGTCCAAGAACATTGCACCCTTGCCGTCGTTCAGGAGGCTCTCTTTCTCCGATCTCAGCCGCTCCTCGTCCACGCGAATCAACGAGGATCTTGCGCACTCTTTTGGCTCCGATTTGTATGACTTTCAGCTGAGCGAGCTACGTGCTGTGACGCAGAACTTTTGCAGCAATTTCTTGCTGGGTGAAGGAGGGTTCGGAACGGTGCATAAGGGTTACGTAGATGACAACTTGAGGCAGGGTTTGAAGGCACAACCTGTTGCTGTTAAGCTTCTTGACATTGAAGGCTTGCAAGGACACCGTGAATGGCTTGCAGAAGTGATTTTTCTTGGGCAGCTAAGACACCCCAATTTGGTTAAGTTGATTGGATATTGCTGTGAGGATGAAGAACGACTACTTGTCTATGAATTCATGCCACGAGGAAGCTTGGAGAATCACCTCTTCAGAAGGTTAACATCACTGCCATGGGGGACAAGATTAAGAATCGCAATAGGTGCTGCTAAAGGCCTTTCCTTCTTGCATGGAGCTGAGAAACCAGTCATTTATAGAGACTTCAAGACTTCCAATGTTTTGCTTGATTCAGAGTTCACAGCAAAATTGTCAGATTTCGGACTTGCAAAAATGGGGCCAGAGGGATCAAACACACATGTTTCAACTAGAGTTATGGGCACTTATGGATATGCAGCTCCAGAATACATCTCAACAGGGCACTTGACCACCAAAAGTGATGTCTATAGCTTCGGGGTAGTCCTGCTAGAACTGCTTACAGGAAGGAGAGCAATGGACAAAACAAGAGCAAAGACCGAGCAAAACCTTGTGGATTGGTCAAAACCATACTTGAGTAGCAGTAGGAGGTTGAGGTATATTATGGATCCAAGGCTTGCAGGCCAATATTCAGTGAAGGGTGCAAAGGAGATGGCCCATTTGGCATTGCAATGCATAAGTTTGAATCCTAAAGACAGACCAAGAATGCCAACAATTGTTGAAATTCTTGAAGGCTTGCAACAGTACAAGGACATGGCTGTTACCAGTGGACACTGGCCAGTGTCACAAAAATCTACCAAGAATAGAGTCTCTAACAATAAGGTGAAAACTAGAGCCGTTGCCCACAAGCAACCATCTCCTCCGGTTTCAACCGGAAAAACTTGA 1257 0.4614 MKQKPSKPWRPFTSNCCTTEDQTIFRNFSRCKPSRSDLSKNIAPLPSFRRLSFSDLSRSSSTRINEDLAHSFGSDLYDFQLSELRAVTQNFCSNFLLGEGGFGTVHKGYVDDNLRQGLKAQPVAVKLLDIEGLQGHREWLAEVIFLGQLRHPNLVKLIGYCCEDEERLLVYEFMPRGSLENHLFRRLTSLPWGTRLRIAIGAAKGLSFLHGAEKPVIYRDFKTSNVLLDSEFTAKLSDFGLAKMGPEGSNTHVSTRVMGTYGYAAPEYISTGHLTTKSDVYSFGVVLLELLTGRRAMDKTRAKTEQNLVDWSKPYLSSSRRLRYIMDPRLAGQYSVKGAKEMAHLALQCISLNPKDRPRMPTIVEILEGLQQYKDMAVTSGHWPVSQKSTKNRVSNNKVKTRAVAHKQPSPPVSTGKT 418
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca06g01102 418 MobiDBLite consensus disorder prediction 382 403 - -
Cca06g01102 418 SUPERFAMILY Protein kinase-like (PK-like) 70 369 IPR011009 -
Cca06g01102 418 CDD STKc_IRAK 97 370 - -
Cca06g01102 418 Pfam Protein tyrosine and serine/threonine kinase 97 367 IPR001245 GO:0004672|GO:0006468
Cca06g01102 418 ProSitePatterns Protein kinases ATP-binding region signature. 97 126 IPR017441 GO:0005524
Cca06g01102 418 MobiDBLite consensus disorder prediction 381 418 - -
Cca06g01102 418 Gene3D Phosphorylase Kinase; domain 1 53 173 - -
Cca06g01102 418 Gene3D Transferase(Phosphotransferase) domain 1 174 392 - -
Cca06g01102 418 ProSiteProfiles Protein kinase domain profile. 91 370 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca06g01102 418 PANTHER OS01G0588500 PROTEIN-RELATED 32 403 - -
Cca06g01102 418 PANTHER SERINE/THREONINE-PROTEIN KINASE PBL15-RELATED 32 403 - -
Cca06g01102 418 ProSitePatterns Serine/Threonine protein kinases active-site signature. 216 228 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca06g01102 Cca-Chr6 25099911 25104223 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca06g01102 79 406 Glycoside Hydrolase AT3G07070 49.555 8.45e-103 309
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Cca06g01102 PK_Tyr_Ser-Thr 1.7e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca06g01102 - - gmx:100814241 758.829
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca06g01102 06 25099911 25104223 Cca06g01102 06 25099911 25104223 ECH