Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca06g01096 ATGTCCGGCGAGATGTCGCCGGCGGCGGCGAGGGAGGAGAGGGGGCCCGGTCAGCCGCAGTGGAGCCAGCAGGAGACGAGGGAGTTCATAGCGATACGCGCGGAGCTGGAGAAGGACTTCACGGCGTCGAAGCGGAACAAGACGCTTTGGGAAGTGGTGAGTTCGAAGATGAGAGAGAGAGGGTTCAGGAGAAGCCCCGAACAGTGCAAATGCAAGTGGAAGAACCTCGTTAATCGCTATAAGGGAAAAGAGACATCTGACCCAGAGCATGGAAGGCAATGCCCTTTTTTTGAAGAATTGCATGCAGTCTTTACCCAAAGGGCACATAACATGCAGCGATTACTTCTTGAATCTGAAACTCGTTCAGCTCAAACCAAAAAAGGGGTGAAAAGATCAAGTGTAGACCGATCCTCGGAGGAACTCTCGgaagatgatgatgaggttgaatatgacagtgaagaggaaAAACCTTCCAGAAGCAATACCCGCAAAAGGAAAGTTGACAAAGTTGGAATGGAAAAATCTTCAAGGGCAAACAATCCATCAAATGTTGTCAGTAATAGTACTAGTAGTATTCAGGAAATGCTGAAGGAATTTTTCCAGCACCAGTTAAGGATGGAGATGCAGTGGAGGGAGATGATGGAAAGGCGTGCTCAGGAAAGGCAATTGTTTGAACAGGAATGGAGGCAGTCAATGGAGAAGCTTGAGAGGGAGAGATTAATGATTGAACAGGCATGgagggagagagaagaacagaggagaatgagagaagagagtagggcagagagaAGGGATGCTTTGTTGACGACCCTTTTGAACAAACTCATTAATGAATCTAACTAA 843 0.4282 MSGEMSPAAAREERGPGQPQWSQQETREFIAIRAELEKDFTASKRNKTLWEVVSSKMRERGFRRSPEQCKCKWKNLVNRYKGKETSDPEHGRQCPFFEELHAVFTQRAHNMQRLLLESETRSAQTKKGVKRSSVDRSSEELSEDDDEVEYDSEEEKPSRSNTRKRKVDKVGMEKSSRANNPSNVVSNSTSSIQEMLKEFFQHQLRMEMQWREMMERRAQERQLFEQEWRQSMEKLERERLMIEQAWREREEQRRMREESRAERRDALLTTLLNKLINESN 280
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca06g01096 280 Gene3D - 21 82 - -
Cca06g01096 280 PANTHER - 18 278 - -
Cca06g01096 280 SMART sant 17 79 IPR001005 -
Cca06g01096 280 ProSiteProfiles Myb-like domain profile. 21 77 IPR001005 -
Cca06g01096 280 MobiDBLite consensus disorder prediction 153 173 - -
Cca06g01096 280 MobiDBLite consensus disorder prediction 175 189 - -
Cca06g01096 280 PANTHER - 18 278 - -
Cca06g01096 280 MobiDBLite consensus disorder prediction 117 189 - -
Cca06g01096 280 MobiDBLite consensus disorder prediction 1 27 - -
Cca06g01096 280 Pfam Myb/SANT-like DNA-binding domain 19 102 IPR044822 -
Cca06g01096 280 Coils Coil 225 245 - -
Cca06g01096 280 CDD GT1 19 84 - -
Cca06g01096 280 MobiDBLite consensus disorder prediction 123 138 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca06g01096 Cca-Chr6 25048020 25049709 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca06g01096 6 280 Trihelix Transcription Factor Family AT2G38250 44.803 9.35e-51 167
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Cca06g01096 Myb_DNA-bind_4 1.5e-22 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca06g01096 - - gmx:100812635 423.32
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca06g01096 06 25048020 25049709 Cca06g01096 06 25048020 25049709 ECH