Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca06g01092 ATGGAGGACAACGAGATTCTAGAGGAGCTTCTCAACATCGAGGTTGAGATTCAAGATGTCCAAGAACAAATAAGGGCCTTGATCGAGAGGCAAGAGAATTTGTACGAGAGAAAATCGGAGCTGAGTGCTATTCTGGAAGCGTGTAAAGAATCTGGAAACGAGGCTAATAATGTGGCATCAAGCACTGCGGAAAATTGGAGTGGGACGTTTGAATGGGATTCTGAAGCAGATGATGTTAGGTTGAATGTTTTTGGCATTTCGTCCTACCGTGCAAATCAAAAAGAGATAATTAATGCCATTATGAGTGGAAGAGATGTTCTGGTGATTATGGCTGCAGGTGGTGGGAAGAGCCTCTGCTACCAGCTTCCTGCTGTTATGCGTGATGGAATTGCTCTAGTCGTCAGTCCTTTGCTTTCATTAATACAAGATCAGGTAATGGGTTTGACTGCTCTGGGCATTCCAGCACATATGTTGACTTCAACAAATAAAGGGGATGAGAAGTTCATATACAAGGCTTTGGAGAAGGGAGAGGGGGAACTCAAAGTATTGTATGTCACTCCAGAAAAGATATCAAAAAGCAAGAGGTTTATGTCAAAACTTGAAAAATGCCATCATGCTGGTCGACTCTCTCTAATTTCAATTGATGAGGCACATTGCTGTAGTCAGTGGGGTCATGACTTTCGACCTGACTACAAGAGCCTCGGTATTCTCAAGACACAGTTCCCTAATGTTCCTATGGTTGCTTTGACTGCCACTGCTACTCAGAGGGTCCAAAATGATCTGATAGAGATGTTGCATATTCCTAGATGTGTCAAATTTGTCAGCACAGTAAATAGGCCAAACTTGTTTTATATGGTAAAGGAGAAGTCATCCGTTGGGAAGGTAGTAATTGATGAAATTGCAGAATTCATTCAAGAATCTTATCCAAATAATGAATCAGGGATTGTTTATTGCTTCTCTAGGAAGGAATGTGAACAGGTTGCAAAGGAGTTGAGGGAGAGAGGAGTTTCAGCTGATTATTATCATGCAGACATGGATGTAAATTTTCGTGAAAAAGTTCACATGAGGTGGAGCAATAACAAGCTGCAGGTCATAGTCGGTACAGTAGCTTTTGGTATGGGAATCAACAAACCAGATGTCAGGTTTGTCATCCATCACAGCTTGAGTAAATCAATGGAAACATACTACCAGGAAAGTGGTCGAGCTGGCCGAGATGGACTTCCTTCTGAATGCTTGCTGTATTTTAGACCTGGTGATGTTCCTCGTCAGAGCTCAATGGTCTTCTACGAAAACACCGGACTGCAGAATCTCTATGACATAGTACGATATTGTCAGTCCAAAAGACAATGCCGACGAAGTGCCTTTTTCCGGCATTTTGCTGAGCCACTTCAAGAGTGCAATGGGATGTGCGACATCTGTGCATTCGCAAGTGAGGTGAAGGAAGTGGATGTTTCTGGTCATGCAAAACTGATGGTTTCATTGTTGCAAGACATGCAAGCAAATGATCAGAGGTCAACAATGTTGCAATTAGTTGATAAAATGAAAATAAAACAGAAGGAACTAGGTTCTGAATTGAAACGAGAGGAAATTGAGCAGCTCATATTACACCTTTTACTTGAGCGGTCTTTGAAAGAAGAATTTCAGCATACAGCTTACGCCACAAATGCTTACGTTACCGTGGGGCCGTTGGCAAGGCAAATATTACAAGGGAAGAAATCTGTGAAACTTGAGATTTATACTGAACAGAGAACTAAAGCTGGTGTAAGATCAGTGAAACGCAGCCTTGGGTCCTCCGGTTTGGAGCTAAAGCTTGATGAGCTGAGAAAAGAACTGTCCTCTGCCCATGGAGGAATACTTCCACACTCTGTCTTATCCACTGAACAAATCAACTTGTTAAGTTCTCAAAAACCTAACTCACTGGAGCAGTTGGAGAAGGTAATTGGAAAACTGAAGACAGAAAAGTATGGACATAGAATAATTGAGCAAATTGAAAAATATTCAAATTTCAAGCCTGCTGATAAACAAGTAACTGATGGTAGGGCTGCGAAGAGGTCGAAGACCAAGAAAAATCTTGTTCTTATTGAAAGTAGTGAAGATGAAGAATGCTAA 2109 0.4158 MEDNEILEELLNIEVEIQDVQEQIRALIERQENLYERKSELSAILEACKESGNEANNVASSTAENWSGTFEWDSEADDVRLNVFGISSYRANQKEIINAIMSGRDVLVIMAAGGGKSLCYQLPAVMRDGIALVVSPLLSLIQDQVMGLTALGIPAHMLTSTNKGDEKFIYKALEKGEGELKVLYVTPEKISKSKRFMSKLEKCHHAGRLSLISIDEAHCCSQWGHDFRPDYKSLGILKTQFPNVPMVALTATATQRVQNDLIEMLHIPRCVKFVSTVNRPNLFYMVKEKSSVGKVVIDEIAEFIQESYPNNESGIVYCFSRKECEQVAKELRERGVSADYYHADMDVNFREKVHMRWSNNKLQVIVGTVAFGMGINKPDVRFVIHHSLSKSMETYYQESGRAGRDGLPSECLLYFRPGDVPRQSSMVFYENTGLQNLYDIVRYCQSKRQCRRSAFFRHFAEPLQECNGMCDICAFASEVKEVDVSGHAKLMVSLLQDMQANDQRSTMLQLVDKMKIKQKELGSELKREEIEQLILHLLLERSLKEEFQHTAYATNAYVTVGPLARQILQGKKSVKLEIYTEQRTKAGVRSVKRSLGSSGLELKLDELRKELSSAHGGILPHSVLSTEQINLLSSQKPNSLEQLEKVIGKLKTEKYGHRIIEQIEKYSNFKPADKQVTDGRAAKRSKTKKNLVLIESSEDEEC 702
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca06g01092 702 Gene3D - 479 579 IPR036388 -
Cca06g01092 702 PANTHER ATP-DEPENDENT DNA HELICASE Q1 7 680 - -
Cca06g01092 702 SMART RQC_2 483 580 IPR018982 GO:0006260|GO:0006281|GO:0043138
Cca06g01092 702 Pfam HRDC domain 603 662 IPR002121 GO:0003676
Cca06g01092 702 SUPERFAMILY HRDC-like 603 668 IPR010997 GO:0000166|GO:0044237
Cca06g01092 702 Gene3D - 279 475 IPR027417 -
Cca06g01092 702 Pfam Helicase conserved C-terminal domain 302 405 IPR001650 -
Cca06g01092 702 CDD DEXHc_RecQ1 71 278 - -
Cca06g01092 702 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 296 445 IPR001650 -
Cca06g01092 702 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 128 422 IPR027417 -
Cca06g01092 702 Pfam DEAD/DEAH box helicase 91 258 IPR011545 GO:0003676|GO:0005524
Cca06g01092 702 CDD SF2_C_RecQ 279 415 - -
Cca06g01092 702 SMART ultradead3 85 287 IPR014001 -
Cca06g01092 702 Pfam RecQ zinc-binding 418 474 IPR032284 -
Cca06g01092 702 PANTHER DNA HELICASE RECQ FAMILY MEMBER 7 680 - -
Cca06g01092 702 Coils Coil 10 37 - -
Cca06g01092 702 ProSiteProfiles HRDC domain profile. 594 673 IPR002121 GO:0003676
Cca06g01092 702 Gene3D HRDC domain 598 666 IPR044876 -
Cca06g01092 702 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 97 271 IPR014001 -
Cca06g01092 702 SMART helicmild6 325 406 IPR001650 -
Cca06g01092 702 Coils Coil 511 531 - -
Cca06g01092 702 TIGRFAM recQ_fam: ATP-dependent DNA helicase, RecQ family 82 505 IPR004589 GO:0004386|GO:0006310
Cca06g01092 702 Gene3D - 46 278 IPR027417 -
Cca06g01092 702 Pfam RQC domain 480 584 IPR018982 GO:0006260|GO:0006281|GO:0043138
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca06g01092 Cca-Chr6 25003420 25016669 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca06g01092 84 420 Eukaryotic Initiation Factors Gene Family AT3G19760 21.008 4.19e-08 54.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca06g01092 K10899 - gmx:100817635 1247.65
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca06g01092 06 25003420 25016669 Cca06g01092 06 25003420 25016669 ECH