Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca06g01086 ATGTCTCTTCTCAGCAGATTCTTCTACAAGCGCCCCCCCGATGGCTTACTCGAATTCTCCGACAGAGTCTACGTCTTCGATTCCTGCTTCTCCACCGAAGCATTGCCCGAAGGAATGTACACCCTCTACCTCCGCCAAATCCTCGCCGACCTCCACGAGGACTTCCCGGAATCCTCCTTCCTCGCCGTCAATTTCCGCGACGGCCAGCGCCGCAGCCACTTCGCCGAAGTCCTCTGCGACGCCGGCGACGTCACCGTCGTCGACTACCCCAAGCAGTACGAGGGCTGCCCCCTCCTCCCCCTCTCCCTCGTCCACCACTTCCTCCGCCTCTGCGACACGTGGCTCGCCGACACCGCGCACAACGTGATTCTCTTCCACTGCGAGCGAGGGGGGTGGCCCCTCCTCGCGTTTCTGCTCGCAGGGTTTCTCGTCTTCCGAAGGGTGCAGGGTGGTGAAAGGAGGACTCTTGAGATGGTTCATAAGGAAGCTCCTAAAGGGCTGTTGCAGCTCCTGTCGGCGCTGAACCCCTTGCCGTCGCAGCTGCGGTATATTCAGTATGTGGCGCGGAGGAACATTGCGGCGGAGTGGCCGCCGCCGGAGAGGGCGCTGTCGCTGGACTGTGTTATACTGAGAGGGGTTCCCGGGTTTGATGGGGGGAATGGGTGCAGGCCCTTCTTTAGGATTTTTGGCAGGAATTTGCTTAGTAAAGGGGGGCTTTCAACGCAGATGATTTATAACATGCATAAGAAGAAGAAGAGTTTGAGGCATTATAGACAGGCAGACTGTGATGTGATCAAGATTGATATTCAATGTTTAGTGCAAGGggatgtggtgttggagtgtgtgcatttggatttggatCCAGAGAGGGAAGTGATGATGTTCCGGGTGATGTTCAACACGGCATTTATTCGGTCCAACATATTGATGCTGAACACTGAGAATTTGGATATTCTTTGGGATTCAAAGGAACGGTATCCGAAGGGCTTTCGGGCTGAGGTTTTGTTTGGGGAGGTTGAAAGCATAAGTCCCCCAAGAGCTCCAACAACTATTTTAGATGGTGAGGTGAAAGGTGGATTGCCCATTGAGGCATTTTCAAGGGTTCAAGAACTTTTTAGTGGCGTAGAATGGGTTGAAAGTGGTGATGCTGCTGCTGTCTGGCTGCTCAAACAGCTTACGGTCTTAAATGATGCCAAAGAGTTTTCTAGGTTTCAAGGTAGAGGAAGTTGGTACTCATCACCTGCAGACTCTGAAGAAGAAAATAATGAATCGAGCACTGCTGATAGTTCAGATGAGGCCTTTGATGTTATTCCCAGGTCTTCTGCTGATCACTCGAGATTTTTGACATCTGACACCCCTGATTTGGTCCATTTAGCTTTTGAGAACAATGGTGGAGATTATGTAAATCTAACTTCAGGAACACCTGATCAGTTATTGACTGATAACGTTTCATCAGCTCATCATGCTCCAAGTAAGGAATATTCTCCTTGTTCGTCTCCACCATTGCCTTCGTCAGTTCCCACTACTAAACCTCTTCCAAAACCAGAACTACCACCTCCACTAACTTCTAATGAAGGCCACCCTTTAGCTCCATCTCCACATCCGATGGTTCAAACTGTGAACAATGCTTCTACATTGCTTTCAActcctccacctcctcctccccctccacctcctATAGGTTGCAATGCCAATATTGCTCCTAGtcctcctccaccacctcctcctcctcctcctcctGGTCATGTACAAACAGGTTCAATCCCACCGCCTCCTCCTGCAGGTCCTGTGCAAATAGGTTCAGTCCCACCACCTCCCCCTCCTCCTCCAGGTCCTTTTCGAACAGGTTCTGCCCCACCACCACCACCACCTCCACCACCTCCTCCCCCTCCTCCTCCAGGTCCTGTACGAACTGGTTTGGCCCCACCACCTCCTCCTCCTCCTCCTCCAGGTCCTTTCCGAACAGGTTCTGCCCCACCACCTCCACCTCCACCTCCCCCAGGTCCTGTACAAATGGGTTCAGCCCCACCACCTCCACCTCCTCCTCCAGTCCCTGTAAGAATGGGTTCAGCTCCACCACCTCCACCTCCTCCTCCAGGTCCTGTACGACAAGGTTCAGCCCCACCACCTCCACCTCCTCCTCCAGGTCCTGTACGACAAGGTTCAGCCCCACCACCTCCACCTCCTCCTCCAGGTCCTGTCCGAACTGGTTCAGCCCCACCACCTCCACCTCCTCCTCCAGGTCCTGTCCGAACTGGTTCAGCCCCACCACCTCCACCTCCTCCTCCAGGATCTGTAGGAACTGGTTCAGCTCCACCTCCTCCTCCTCCTCCTAGTTTACGAACAGGTTCAGCTCCACCACCACCACCTGCGCCAAAGCCTCCAAGTGCTCCTCCTCCTCCACCCGGCCGTGGTGCACCATCAGTTCCACCTCCACCTCCTGCAGCTAGGGCTTCTGGTGTGGCACCACCACCAGGAAAAGCTTCAACAAATGTTGGAAGAGGTCGTGGTACTGCTACTGCTCCTAAGAAAACTTTGCTGAAACCCCTACATTGGGTGAAAGTTGCTCGAGCTGCCAAGGGAAGTCTATGGGCTGATTCACAGAAACAGGATAGTGAAACAAGGGCCCCTGAGATAGATATATCAGAACTTGAGAGTCTGTTTTCAGCAGCTTCTGCTTCTGATGGGAACAGTACTAAAGGTGGAGCTCGTCGTGGTCCTAATATTAAACCTGAGAAAGTACAATTGATTGACTTGCGTAGAGCATATAATTGTGAAATAATGCTCTCTAAAATCAAAATTCCTTTGCCAGATATGCTTAAAGCAGTCCTGGAATTGGATTCTTTGGTTTTGGATATTGATCAGGTTGAGAATCTCATCAAGTTCTGTCCCACAAAGGAAGAAATGGAGATGTTAAAGAATTATACGGGAAACAAGGAGATGCTTGGAAAGTGTGAACAGTTTTTTATGGAGCTGATGAAGGTTCCACGTGTGGAATCCAAATTAAGGGTTTTTGCTTTTAAAATCACCTTTTCTTCTCAGGTGAACGATTTAAAGTCAAATTTGAACACAATCAACCATGCATCCAGAGAGGTGAAAGAATCTGGAAAATTGCGTCAAATAATGCAGACTATTCTTACATTGGGCAATGCCTTGAATCAAGGAACAGCACGGGGATCAGCAGTAGGATTCAAATTGGATAGCCTTCTTAAATTATCGGATACTCGTGCAAGAAATAACAAAATGACTTTAATGCATTATTTGTGTAAGCTTCTCGCTGAGAAAATGCCAGAATTGCTAGATTTTGACAAGGATCTTGTCCATTTGGAAGCAGCTTCTAAGATTCAACTAAAAGCATTGGCTGAAGAAATGCAAGCTGTGAGTAAAGGTTTAGAGAAAGTTGAGCAAGAACTCATTGCTTCTGAAAATGATGGTGCTATATCTACAGGATTTCGTAAGGTGTTGAAGAATTTTCTTGATATTGCTGAAGCTGATGTGAGGTCCCTTATATCTTTGTATTCTGAAGTGGGAAAAAGTGCAGACTCTTTGTCCCAGTACTTTGGAGAGGATCCAGCTAGATGCCCCTTCGAACAAGGTCTGATGTTCTCTTCACTATACACACAAACACAATACCTGAGTTTATTTTTTGGTTGCAATGATTATGTAGAAGAGCCCTTGTTTTGGGTTTGGGTTTATGAAATTTAA 3705 0.4753 MSLLSRFFYKRPPDGLLEFSDRVYVFDSCFSTEALPEGMYTLYLRQILADLHEDFPESSFLAVNFRDGQRRSHFAEVLCDAGDVTVVDYPKQYEGCPLLPLSLVHHFLRLCDTWLADTAHNVILFHCERGGWPLLAFLLAGFLVFRRVQGGERRTLEMVHKEAPKGLLQLLSALNPLPSQLRYIQYVARRNIAAEWPPPERALSLDCVILRGVPGFDGGNGCRPFFRIFGRNLLSKGGLSTQMIYNMHKKKKSLRHYRQADCDVIKIDIQCLVQGDVVLECVHLDLDPEREVMMFRVMFNTAFIRSNILMLNTENLDILWDSKERYPKGFRAEVLFGEVESISPPRAPTTILDGEVKGGLPIEAFSRVQELFSGVEWVESGDAAAVWLLKQLTVLNDAKEFSRFQGRGSWYSSPADSEEENNESSTADSSDEAFDVIPRSSADHSRFLTSDTPDLVHLAFENNGGDYVNLTSGTPDQLLTDNVSSAHHAPSKEYSPCSSPPLPSSVPTTKPLPKPELPPPLTSNEGHPLAPSPHPMVQTVNNASTLLSTPPPPPPPPPPIGCNANIAPSPPPPPPPPPPPGHVQTGSIPPPPPAGPVQIGSVPPPPPPPPGPFRTGSAPPPPPPPPPPPPPPPGPVRTGLAPPPPPPPPPGPFRTGSAPPPPPPPPPGPVQMGSAPPPPPPPPVPVRMGSAPPPPPPPPGPVRQGSAPPPPPPPPGPVRQGSAPPPPPPPPGPVRTGSAPPPPPPPPGPVRTGSAPPPPPPPPGSVGTGSAPPPPPPPSLRTGSAPPPPPAPKPPSAPPPPPGRGAPSVPPPPPAARASGVAPPPGKASTNVGRGRGTATAPKKTLLKPLHWVKVARAAKGSLWADSQKQDSETRAPEIDISELESLFSAASASDGNSTKGGARRGPNIKPEKVQLIDLRRAYNCEIMLSKIKIPLPDMLKAVLELDSLVLDIDQVENLIKFCPTKEEMEMLKNYTGNKEMLGKCEQFFMELMKVPRVESKLRVFAFKITFSSQVNDLKSNLNTINHASREVKESGKLRQIMQTILTLGNALNQGTARGSAVGFKLDSLLKLSDTRARNNKMTLMHYLCKLLAEKMPELLDFDKDLVHLEAASKIQLKALAEEMQAVSKGLEKVEQELIASENDGAISTGFRKVLKNFLDIAEADVRSLISLYSEVGKSADSLSQYFGEDPARCPFEQGLMFSSLYTQTQYLSLFFGCNDYVEEPLFWVWVYEI 1234
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca06g01086 1234 Pfam Formin Homology 2 Domain 840 1198 IPR015425 -
Cca06g01086 1234 SUPERFAMILY Formin homology 2 domain (FH2 domain) 850 1197 - -
Cca06g01086 1234 Gene3D - 197 342 - -
Cca06g01086 1234 Pfam C2 domain of PTEN tumour-suppressor protein 199 337 IPR014020 -
Cca06g01086 1234 MobiDBLite consensus disorder prediction 496 526 - -
Cca06g01086 1234 MobiDBLite consensus disorder prediction 478 492 - -
Cca06g01086 1234 PANTHER FORMIN-J 772 1192 - -
Cca06g01086 1234 PANTHER FORMIN-J 1 595 - -
Cca06g01086 1234 Gene3D Protein tyrosine phosphatase superfamily 15 192 IPR029021 -
Cca06g01086 1234 Coils Coil 1117 1144 - -
Cca06g01086 1234 SMART PTEN_C2_2 198 338 IPR014020 -
Cca06g01086 1234 SMART it6_source 502 1227 IPR015425 -
Cca06g01086 1234 ProSiteProfiles C2 tensin-type domain profile. 200 339 IPR014020 -
Cca06g01086 1234 MobiDBLite consensus disorder prediction 409 433 - -
Cca06g01086 1234 MobiDBLite consensus disorder prediction 478 845 - -
Cca06g01086 1234 MobiDBLite consensus disorder prediction 547 820 - -
Cca06g01086 1234 ProSiteProfiles Formin homology-2 (FH2) domain profile. 837 1234 IPR015425 -
Cca06g01086 1234 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 200 339 IPR035892 -
Cca06g01086 1234 MobiDBLite consensus disorder prediction 890 909 - -
Cca06g01086 1234 Gene3D Formin, FH2 domain 836 1210 IPR042201 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca06g01086 Cca-Chr6 24958123 24967916 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca06g01086 1 471 FH2 protein (formin) Gene Family AT1G31810 69.492 0.0 721
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca06g01086 - - gmx:100809152 917.531
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca06g01086 06 24958123 24967916 Cca06g01086 06 24958123 24967916 ECH