Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca06g01085 ATGGGTTACGATTCGGATAGCCCCTCGCAAGATGGGAGGGACGAAGATGATGAAGAAGAATATGAGGAGTCTGGCAAGGGTAATCGTTTTCTTGGGTTCATGTTTGGAAATGTAGATAATTCCGGTGATCTGGATGTTGATTATCTTGATGAGGATGCAAAGGAGCATCTTTCTGCATTAGCTGATAAGCTGGGTCCATCTCTGACAGATATAGATTTGTCAGGAAAATCACCACAAACGCCACCTGACGTTGTTGAACAAGGCTGTGATGAAAAAGCTGAAGATGCTATTGATTATGAAGATATTGATGAAGAGTATGATGGTCCTGAGACAGAAGCTGCCAATGAAGAGGACTATTTATTGCCAAAAAAGGAATTTTTTGCTGGTGAAGCCTCTGTTCTTTTGGAGTCCAAAAGTTCCGTCTTTGATGATGAAAATTATGATGAAGAATCTGAAAAGGAGCAAGACTTTGTGAATGATGATACTAAAGTTGATAACATCTCTTTAGCTGGGGAGCAGGAAGAGAGTTTTGTGGATGCATCTAAGGATGAGAGTTCTCTTGAACATGAATTACATGTTGACTCACTGCAGACCGAAGAATTGGATGCTGATGAACAAAAACTTGAGGAGGAAGGGCCTGAAGTTCAGAAAAGGTCAACGGCTATGCCATTGCCTATTTTATATGTGGAAGATGGTTTGGCAATTTTACGCTTCTCTGAAATCTTTGGCATTCATGAACCTCTCAGGAAGGGAGAAAAGAGAGAACATCGACATTCTATTCCTAGAGATAGATACAAGCCTTTGGATTTAACTGATGATATAGTAGAAGAGGATGAAGAGGAATTCCTCAAGAGCTTCTCCCAGAATCTCTCACTCACTAAACAGGTTTGTGTAGTTCATAATGACATGTCAGAAAGCAATGATGTTGACTTGGAGTTTCCAAAATTTGGATTTCTTCATGCGGATGCCTCAGTGGCCATGAAAGATGATCAACAACCAAAGGACTCGTGTCTTAGTGCTGAACCAATGAAAGAGGATTTTGAAGAAGAGCGTTACTTGAAAGATCATCCTTTCATGTGGGCTGACTTTTATCCTCTTGATCAGCAAGACTGGGAAGATGAAATCCTTTGGGGCAATTCTCCTGTTCCAAGTAATAATAATGTTGAAAGCTGTGAAATTTCTGGACCTGAGTTGGGAGCTTCTGGTGGCAGTGAAATGGAAATAGAAAGTGGGATCCAGACTATTCAGATGGTGCCTCAGAAGATACCAGAGGATAAAGATCATAATGTTTTCATGTGCAGCTCTCCTGTCTCATTAGAGCCCTTTGGCTCAAGGGATTCTTCTGGATCTGAGACCAATTTAATATCCAGAAATCTATTTCACCCGCAACTTTTAAGGCTAGAATCCAGATCTGAAGTGGATAATTCTAGTCTTGCAGATGCCAGAGAGGCGGAGATATCTGAGCATAATCAAAGTGGTCAAGTAAAGCGTTTTACCAAGGTTATGTCACAAAACAGAGACATGATGGAGGGTTCCTGGTTAGACAAGATAATATGGGAGGAGCTTGATCAACCGATGGTGAAACCAAAGCTTATTTTTGATCTTCAGGATGATCAAATGCACTTTGAAGTTTTAGATAGCAAGGATGGTACACATCTTCGCCTTCATGCTGGGGCTATGATTTTAACCCGTTCTTTGAAATCAAGCAGTGGGGACTCTTCTGAGCTACTGGGACATGGAAGTCAATATGGATGGCGATACGTTGCTAATGACAAACATTATTCAAACCGTAAAACTTCTCAGCAACTTAAATCCAACTCCAAAAAACGCTCCGCTCATGGTGTCAAAGTTTTTCACTCACAACCTGCACTGAAGCTGCAGACAATGAAATTGAAGTTGAGCAATAAAGATATTGCAAACTTTCACCGGCCAAAAGCATTATGGTATCCTCATGACATTGAGATGGCTGTCAAGGAACAAAGGAAACTGCCTACGCAAGGACCCATGAAAATTATTATAAAGAGTTTGGGTGGCAAGGGGAGTAAACTGCACGTTGATGCTGAAGAAACTCTCTCTTCTGTTAAAGCAAAAGCTTCCAAAAAGCTAGATTTTAAGGCATCAGAAACAGTGAAAATATTTTATTTAGGGAGGGAGCTTGAAGATCACAAACCACTTGTTGCACAAAATGTTCAGCCAAACTCCTTGTTACATCTTGTTCGTACAAAGATACATTTGTGGCCAAAAGCACAACGGGTTCCTGGTGAGAACAAGTCCTTGCGTCCTCCTGGGGCATTTAAGAAAAAGTCTGATCTGTCTGTAAAAGATGGACATGTTTTTCTGATGGAGTATTGTGAAGAAAGGCCTTTACTTTTGAGTAATGTTGGAATGGGTGCAAGACTTTGTACATATTATCAAAAATGCTCACCAGATGACCAGTCTGGCTCCTTATTACGCAACACAGATATTAGCTTGGGGCACATTATTTCTCTGGATCCTGCTGATAAATCTCCTTTCCTTGGAGATTTAAAACCTGGCTGCAGTCAGTCGTCACTAGAGACAAATATGTATAGAGCACCTGTATTTTCTCATAAAGTTCCGTTAACGGACTACCTGCTGGTTCGTTCATCAAAGGGAAAGTTATCATTAAGGCGGATTGATAAAATTAATGTTGTTGGACAGCAGGAGCCTCTCATGGAAGTATTATCTCCTGGAAGTAAAAATCTCCAGACTTACATGATGAACAGGTTATTGGTACACATGTGCCGTGAATTCCAAGCAGCAGAGAAGCGGCACTTGCCTCCTTATATCCGTGTTGATGAATTTCTCTCACACTTTCCTTACCAATCGGAAGCGTCATTCCGGAAGAAAATCAAGGAATATGCCAATTTACAGAGGGGAACAAATGGACAGTCAATTTTGGTTAAAAAGCGAAATTTTCGCATGTGGTCAGAGGACGAATTGAGAAAAATGGTTACACCAGAGCTTGTTTGTGCCTTTGAAAGCATGCAAGCTGGCCTCTACCGTCTAAAACATTTGGGAATAACTGAAACACACCCTACTAATATTTCATCTGCAATGAGTCGGCTTCCTGATGAAGCAATAGCATTGGCTGCTGCATCACACATTGAAAGGGAACTGCAGATTACTCCTTGGAACTTGAGTAGCAATTTTGTTGCTTGTACAAGCCAGGGTAAGGAAAATATTGAAAGAATGGAAATTACTGGTGTTGGTGATCCATCTGGTCGTGGCATGGGTTTTAGCTATGCCCGGGCACCACCTAAGGCACCAGTGTCTAGTGCAATGGTGAAGAAGAAAGCAGCTGCTAACCGCGGAGGTTCTACTGTTACTGGTACCGATGCTGATTTACGTAGATTAAGCATGGAGGCTGCACGAGAGGTTCTTCTGAAGTTCAATGTTCCAGAGGAAGTCATTGCAAAACAAACTAGGTGGCATCGCATTGCTATGATACGTAAACTTTCAAGTGAGCAAGCTGCATCTGGAGTTAAGGTTGATCCGACAACTATCAGCAAATATGCTCGTGGCCAGCGAATGTCCTTTCTTCAGTTACAGCAGCAGACCAGAGAGAAATGCCAGGAGATTTGGGATCGACAAGTTCAGAGTTTGTCAGCTGCAAATGGTGATGAAAATGAAAGCGACTCAGAAGGGAATAGTGATCTGGATTCTTTTGCTGGAGATCTGGAAAATTTACTTGATGCTGAGGAGTGTGAAGAAGGAGAAGAGGGTACCAATGACTTAAAACGTGATAAGGGAGATGGTGTTAAGGGTCTTAAAATGAGAAGACGCCCAACTTTGGCTCAGGCAGAGGAGGAAATAGAAGATGAAGCAGCTGAGGCAGCTGAATTATGCAGGTTGCTTATGGATGATGATGAAGCTGACAGGAAGAAAAAGAAGAAAGCTAAAGGTATGGTGGAAGAAGCAAGATTGGTACCAAAGATGCAATCAAAATTTGCCTTTGACAATTCTGAACAAGTTAAGCAAATAACAAATAGTTTCCAATTAGATGGAACTAATCACTTGAAAGAGGATGCAATCACAGATCTTAGGGAGGAGGAAAACTTTCCTGCTAAAAAAAGCAAATCACTGAAGGTCAATAAAGCCAAAAGGAATGATATTACACCTATTAGTCTACCCAATAAAAAAATCAAATTGAATATGGGAGAAGGAATCAAGAACCAGGTGTTTAAGGAGAAAAAACCATCAAGGGAAACTTTTGTTTGTGGGGCATGTGGTCAGCTTGGGCACATGCGAACGAACAAGAACTGTCCAAAATATGGTGAAGATCTAGATACTCAACTTGAATCTACTGATATAGAAAAATCATCTGGAAAATCCAGCTTTGTGGATCCATCTAGTCAATCCCAGCTTAAAGCCCCCTCCAAAAAGACACTGTCAAAAAGTGCAACAAAAATTGCTCCTGTTGACAATTCAACAAAAATTCCACTGAAATTCAAATGTAGTTCCACGGAAAAATCTTCTGATAGACCTGCAATAGAAACCCTGCAGAGTTCTGACAAGCCAGTGACTTCTGACTCAGAAACTGCAAAGTCTGCTAAGGTCAATAAGATAATTATTCCCAACAAAGCGAAACAGGATGATACGCAGGCTGAATCTCATAAACATGCTATTGTTATACGGCCTCCTTCTGATTCAGGTAGAGGTCAGGTTGAGCCTCATAAGTTCCCAATTAAAATACGCCCACCAACAGAAATAGATAGGGAGCAAAGTCACAAAAAGATTATTATAAAACGTACTAAGGAGGTTATTGATCTGGAACTGGACAGTCCTGGGGCAAACACAGGACATCAACACAGAAAAACTAAAAGAATTGTTGAATTGTCAAATTTCGAGAAACATAAAAAACAGGAGACTATGTATGGAACTGAAGGTTTTGCAAAATGGAACACTAAAGGGGACAGAAGATGGTGGGAAGAGCAAGAGAAACGGAGAAATGATGCAAGACTTCGAGAAGAAGACAGAGCAAGGAGGCATCACAAAGAAGAAATCAGGATGCTCAAAGAGCAAGAAAGGTTAGATGAGATTAAAAGATTTgaagaagatattagaagagagagagaggaggaagaacggcaaaaagctaagaagaaaaagaagaagaaaaagCTTGATTTAAGAGATGAGTATCTAGATGACCCCAGACCAAGAAGATATGATAAGAGAATGCCAGAAAGGGACCGGAGTGGAAAAAGGAGATCTGTTGCTGAGTTGGGAAAGATTAGTGCAGATTACATGCCGCCAACAAAACGCCGAAGAGGGGGAGGGGGAGAGGTTGGTTTGGCAAATATCTTGGAGAGCATTGTGGAAGCCCTTAAAGATAGGAGTGATCTGTCGTATCTTTTCTTGAAACCGGTGTCGAAGAAGGAGGCTCCTGACTACCTGGACATAATAGAGAGGCCCATGGATCTTTCCAGAATCAGGGAGAGAGTACGGAATATGGAGTACAAGAGCCGAGAAGATTTCAGGCACGATGTCTGGCAGATTACTTATAATGCACATAAATATAACGATGGACGAAATCCGGGAATCCCTCCCCTTGCAGATATGCTTTTGGATTATTGTGATTATTTGTTGCTTGAGAATGAAGATAACCTCACTGCAGCAGAAGCTGGCATTGAGATTAAAGATTTCTAA 5670 0.4072 MGYDSDSPSQDGRDEDDEEEYEESGKGNRFLGFMFGNVDNSGDLDVDYLDEDAKEHLSALADKLGPSLTDIDLSGKSPQTPPDVVEQGCDEKAEDAIDYEDIDEEYDGPETEAANEEDYLLPKKEFFAGEASVLLESKSSVFDDENYDEESEKEQDFVNDDTKVDNISLAGEQEESFVDASKDESSLEHELHVDSLQTEELDADEQKLEEEGPEVQKRSTAMPLPILYVEDGLAILRFSEIFGIHEPLRKGEKREHRHSIPRDRYKPLDLTDDIVEEDEEEFLKSFSQNLSLTKQVCVVHNDMSESNDVDLEFPKFGFLHADASVAMKDDQQPKDSCLSAEPMKEDFEEERYLKDHPFMWADFYPLDQQDWEDEILWGNSPVPSNNNVESCEISGPELGASGGSEMEIESGIQTIQMVPQKIPEDKDHNVFMCSSPVSLEPFGSRDSSGSETNLISRNLFHPQLLRLESRSEVDNSSLADAREAEISEHNQSGQVKRFTKVMSQNRDMMEGSWLDKIIWEELDQPMVKPKLIFDLQDDQMHFEVLDSKDGTHLRLHAGAMILTRSLKSSSGDSSELLGHGSQYGWRYVANDKHYSNRKTSQQLKSNSKKRSAHGVKVFHSQPALKLQTMKLKLSNKDIANFHRPKALWYPHDIEMAVKEQRKLPTQGPMKIIIKSLGGKGSKLHVDAEETLSSVKAKASKKLDFKASETVKIFYLGRELEDHKPLVAQNVQPNSLLHLVRTKIHLWPKAQRVPGENKSLRPPGAFKKKSDLSVKDGHVFLMEYCEERPLLLSNVGMGARLCTYYQKCSPDDQSGSLLRNTDISLGHIISLDPADKSPFLGDLKPGCSQSSLETNMYRAPVFSHKVPLTDYLLVRSSKGKLSLRRIDKINVVGQQEPLMEVLSPGSKNLQTYMMNRLLVHMCREFQAAEKRHLPPYIRVDEFLSHFPYQSEASFRKKIKEYANLQRGTNGQSILVKKRNFRMWSEDELRKMVTPELVCAFESMQAGLYRLKHLGITETHPTNISSAMSRLPDEAIALAAASHIERELQITPWNLSSNFVACTSQGKENIERMEITGVGDPSGRGMGFSYARAPPKAPVSSAMVKKKAAANRGGSTVTGTDADLRRLSMEAAREVLLKFNVPEEVIAKQTRWHRIAMIRKLSSEQAASGVKVDPTTISKYARGQRMSFLQLQQQTREKCQEIWDRQVQSLSAANGDENESDSEGNSDLDSFAGDLENLLDAEECEEGEEGTNDLKRDKGDGVKGLKMRRRPTLAQAEEEIEDEAAEAAELCRLLMDDDEADRKKKKKAKGMVEEARLVPKMQSKFAFDNSEQVKQITNSFQLDGTNHLKEDAITDLREEENFPAKKSKSLKVNKAKRNDITPISLPNKKIKLNMGEGIKNQVFKEKKPSRETFVCGACGQLGHMRTNKNCPKYGEDLDTQLESTDIEKSSGKSSFVDPSSQSQLKAPSKKTLSKSATKIAPVDNSTKIPLKFKCSSTEKSSDRPAIETLQSSDKPVTSDSETAKSAKVNKIIIPNKAKQDDTQAESHKHAIVIRPPSDSGRGQVEPHKFPIKIRPPTEIDREQSHKKIIIKRTKEVIDLELDSPGANTGHQHRKTKRIVELSNFEKHKKQETMYGTEGFAKWNTKGDRRWWEEQEKRRNDARLREEDRARRHHKEEIRMLKEQERLDEIKRFEEDIRREREEEERQKAKKKKKKKKLDLRDEYLDDPRPRRYDKRMPERDRSGKRRSVAELGKISADYMPPTKRRRGGGGEVGLANILESIVEALKDRSDLSYLFLKPVSKKEAPDYLDIIERPMDLSRIRERVRNMEYKSREDFRHDVWQITYNAHKYNDGRNPGIPPLADMLLDYCDYLLLENEDNLTAAEAGIEIKDF 1889
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca06g01085 1889 MobiDBLite consensus disorder prediction 1444 1480 - -
Cca06g01085 1889 CDD Ubl_TAFs_like 669 740 - -
Cca06g01085 1889 SUPERFAMILY TAF(II)230 TBP-binding fragment 24 62 IPR036741 -
Cca06g01085 1889 MobiDBLite consensus disorder prediction 1695 1749 - -
Cca06g01085 1889 ProSitePatterns Bromodomain signature. 1790 1847 IPR018359 -
Cca06g01085 1889 MobiDBLite consensus disorder prediction 1242 1278 - -
Cca06g01085 1889 MobiDBLite consensus disorder prediction 66 86 - -
Cca06g01085 1889 SUPERFAMILY Ubiquitin-like 662 740 IPR029071 -
Cca06g01085 1889 MobiDBLite consensus disorder prediction 1648 1680 - -
Cca06g01085 1889 MobiDBLite consensus disorder prediction 1 31 - -
Cca06g01085 1889 Pfam Bromodomain 1777 1851 IPR001487 GO:0005515
Cca06g01085 1889 Coils Coil 1661 1718 - -
Cca06g01085 1889 MobiDBLite consensus disorder prediction 1247 1275 - -
Cca06g01085 1889 Pfam Ubiquitin family 671 741 IPR000626 GO:0005515
Cca06g01085 1889 MobiDBLite consensus disorder prediction 1538 1552 - -
Cca06g01085 1889 CDD Bromodomain 1775 1849 - -
Cca06g01085 1889 Gene3D - 22 68 IPR036741 -
Cca06g01085 1889 SMART ubq_7 669 741 IPR000626 GO:0005515
Cca06g01085 1889 Gene3D - 653 741 - -
Cca06g01085 1889 Pfam TATA box-binding protein binding 18 61 IPR009067 -
Cca06g01085 1889 MobiDBLite consensus disorder prediction 176 202 - -
Cca06g01085 1889 ProSiteProfiles Ubiquitin domain profile. 669 739 IPR000626 GO:0005515
Cca06g01085 1889 MobiDBLite consensus disorder prediction 1210 1229 - -
Cca06g01085 1889 Gene3D - 1685 1887 IPR036427 GO:0005515
Cca06g01085 1889 MobiDBLite consensus disorder prediction 1715 1749 - -
Cca06g01085 1889 MobiDBLite consensus disorder prediction 1563 1584 - -
Cca06g01085 1889 SUPERFAMILY Bromodomain 1756 1874 IPR036427 GO:0005515
Cca06g01085 1889 MobiDBLite consensus disorder prediction 1439 1584 - -
Cca06g01085 1889 ProSiteProfiles Bromodomain profile. 1785 1855 IPR001487 GO:0005515
Cca06g01085 1889 MobiDBLite consensus disorder prediction 139 217 - -
Cca06g01085 1889 PANTHER BNAA01G26290D PROTEIN 1360 1884 - -
Cca06g01085 1889 PANTHER BNAA01G26290D PROTEIN 15 1298 - -
Cca06g01085 1889 MobiDBLite consensus disorder prediction 1487 1523 - -
Cca06g01085 1889 Pfam Protein of unknown function (DUF3591) 589 1155 IPR022591 -
Cca06g01085 1889 SMART bromo_6 1765 1875 IPR001487 GO:0005515
Cca06g01085 1889 PANTHER TRANSCRIPTION INITIATION FACTOR TFIID 15 1298 IPR040240 GO:0001091|GO:0004402|GO:0005669|GO:0006366|GO:0017025
Cca06g01085 1889 PANTHER TRANSCRIPTION INITIATION FACTOR TFIID 1360 1884 IPR040240 GO:0001091|GO:0004402|GO:0005669|GO:0006366|GO:0017025
Cca06g01085 1889 PRINTS Bromodomain signature 1788 1801 IPR001487 GO:0005515
Cca06g01085 1889 PRINTS Bromodomain signature 1802 1818 IPR001487 GO:0005515
Cca06g01085 1889 PRINTS Bromodomain signature 1818 1836 IPR001487 GO:0005515
Cca06g01085 1889 PRINTS Bromodomain signature 1836 1855 IPR001487 GO:0005515
Cca06g01085 1889 Coils Coil 1271 1291 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca06g01085 669 739 Cytoplasmic Ribosomal Protein Gene Family AT3G62250 36.620 7.78e-07 49.3