Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca06g01082 ATGGCGGAAGAAGAGCCTCACCAGAAGCTCTTCCGCTCCTACATGGGCCTCAGCTTCTCCATGTCCCTCGCGCTCCTCGCCAACACCTCCGTCCCCGCGCTGCAGGCCAAGGTCCGCGCCCTCTCCCTCCGGGCCGCCGCCGCCGAGGATGAGCTCCGCCAGATGAAGTCCCGCCGCCACGAGGACTCCAAGGCCAACGCCCGCGTCGTCGAGATCTTCGCCTCTCACCGCAACGCCTGGCAGGCCGAGGAGAAGCGCCTCCTGCACCAGATcgacgccgccgccgacgagatcgcgcgcctccgccgccgcgtcgccgacctcgaggacgcctccgcccgcgccCACAAGGAGCTCGCCGACCGCGACGAGATGATAGGGTTCATGTCAAGGAGGATCGAGGAGGAGGGATTCGGTGGGACGGAGCTCCACGGTAAGAAGAGTAGAGAGTGGGAAGAGGAAGAGGACATGGTGGGGTCCACTAGGCACGTCGAAgaggaggaggaggaggaggaggaggagCAGCTTGAGGTTATCTATGAACAGCATACTCACCAGTTTGGGAACAAtgcctttgattctgactttgtggcttctgcttctaagttctgGGCTGAGAAACCCTCGCTGTGGCAGGATGTACAGTACGAATCCCTTGAATCAATGTATAATGCAAAGCATTTTGTTGCAAGAAGGGAGTCTCCGTGGAAGGTAGATGGTGATTCTGCCGGAGTTTCCTCTAAACTTAAATTACTTGAACAGGAGTTATTGAATCTGGAGAAGATTGGTAAGAATGATCCATCCAAGGTGTCATCCTTGATTAAGAAGCAGGCAAAGAGATATCAAGCGCTTTCAGAAAAAATCGATGATTTGTGCAGCAGAATAGCTAATGATCCGACCGAGTCCTCTCTCAGTTCAGAATTTCAAACCCAAACTCAAACAGAGTTTTTACTGGAAGCATATCGACTTCAACAGGGGGCATCGGAAACAGGACAGAAGCTAATGGCTTTGCAAACTGAAATTGGGAAGAGCCATTACAGGGATGACTTGATAGGTGAGACCTCATTGACCACAAGACGGTCTCTGGACTCTATTAGGAACAACTTCAAAGAAATCCAGCGAAACCTGGAGATATGGTTGGCCAGAATTATTGGTGATCTCGAGGGGATTCTGTCAAGGGAAGGTGCATCTCGTCACCCCCCGCCACTGCAACAGGCTCCACCGGCAGCGACAACTTCCTCAGTGGCACACATGATTCCGACACACACGTATCGCAAGCAAAAAGTTGATGATGGTGAGGCCGGTGATGGAGATGATGGTGGCACGTGTGCGGTGTGCTTGGGAGACTTTGAAGAAGGTGAGGAGTTGAGGACGTTGCCGGAGTGCATGCACTGTTTCCACGTGGCATGCATTGACACGTGGCTGAGCAACAACTCGAGTTGCCCCATTTGCCGTAGCAGTGCCACGCCTTCTGTGGAGGTGCTTCACAGCTCTGACCATGAGCACAGCATGGATATCTCTCAGCTTGCTCTACTCCAAAATGGGTTTCTCATGTAA 1557 0.4785 MAEEEPHQKLFRSYMGLSFSMSLALLANTSVPALQAKVRALSLRAAAAEDELRQMKSRRHEDSKANARVVEIFASHRNAWQAEEKRLLHQIDAAADEIARLRRRVADLEDASARAHKELADRDEMIGFMSRRIEEEGFGGTELHGKKSREWEEEEDMVGSTRHVEEEEEEEEEEQLEVIYEQHTHQFGNNAFDSDFVASASKFWAEKPSLWQDVQYESLESMYNAKHFVARRESPWKVDGDSAGVSSKLKLLEQELLNLEKIGKNDPSKVSSLIKKQAKRYQALSEKIDDLCSRIANDPTESSLSSEFQTQTQTEFLLEAYRLQQGASETGQKLMALQTEIGKSHYRDDLIGETSLTTRRSLDSIRNNFKEIQRNLEIWLARIIGDLEGILSREGASRHPPPLQQAPPAATTSSVAHMIPTHTYRKQKVDDGEAGDGDDGGTCAVCLGDFEEGEELRTLPECMHCFHVACIDTWLSNNSSCPICRSSATPSVEVLHSSDHEHSMDISQLALLQNGFLM 518
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca06g01082 518 MobiDBLite consensus disorder prediction 139 164 - -
Cca06g01082 518 Coils Coil 274 294 - -
Cca06g01082 518 MobiDBLite consensus disorder prediction 139 169 - -
Cca06g01082 518 CDD RING-H2_RNF111_like 442 487 - -
Cca06g01082 518 Coils Coil 362 382 - -
Cca06g01082 518 Coils Coil 31 58 - -
Cca06g01082 518 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 402 491 IPR013083 -
Cca06g01082 518 SMART ring_2 443 484 IPR001841 -
Cca06g01082 518 Coils Coil 162 186 - -
Cca06g01082 518 SUPERFAMILY RING/U-box 442 491 - -
Cca06g01082 518 Pfam Ring finger domain 442 485 IPR001841 -
Cca06g01082 518 PANTHER RIBONUCLEASE P PROTEIN SUBUNIT P38-LIKE PROTEIN 3 398 - -
Cca06g01082 518 PANTHER EXPRESSED PROTEIN 3 398 - -
Cca06g01082 518 ProSiteProfiles Zinc finger RING-type profile. 443 485 IPR001841 -
Cca06g01082 518 Coils Coil 84 118 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca06g01082 Cca-Chr6 24894722 24901254 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca06g01082 414 489 C3H Transcription Factor Family AT1G04360 42.105 8.89e-18 83.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca06g01082 - - gmx:100817102 603.208
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca06g01082 06 24894722 24901254 Cca06g01082 06 24894722 24901254 ECH