Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cca06g01080 | ATGGTTAAGCATAACAATGTTATTCCCAACGGTCACTTCCGTAAGCATTGGCAAAACTATGTGAAGACCTGGTTCAATCAGCCAGCAAGGAAGACAAGAAGACGATTGGCTCGTCAGAAGAAAGCTGTTAAGATTTTCCCCAGACCTACCGCTGGACCTCTTAGACCTGTTGTACATGGTCAAACTTTGAAATACAACATGAAAGTGAGAGCTGGCAGAGGATTTTCTCTGGAAGAACTTAAGGCTGCTGGTATTCCCAAAAAGCTTGCCTCTACTATTGGTATTGCTGTTGATCATCGTCGCAAGAATCGTTCTTTGGAAAGTCTGCAATCAAATGTGCAGAGGTTGAAAACCTACAAGGCTAAGTTGGTTGTGTTCCCAAGACGTGCACGCAAGGTTAAGGCTGGTGATTCTACTCCTGAGGAACTTGCAAATGCCACACAAGTTCAGGGTTCATACTTGCCTATCGTGAGGGAGAAGCCATCTGTAGAGCTTGTTAAGGTTACAGATGATATGAAGGCATTTAAAGCTTATTATAAGCTTCGACTTGAACGCACAAACAAACGCCATTATGGTGCTAGACTGAAGAAGGCTGCTGAAGCTGAAAAGGAAGACAAGAAGTGA | 624 | 0.4359 | MVKHNNVIPNGHFRKHWQNYVKTWFNQPARKTRRRLARQKKAVKIFPRPTAGPLRPVVHGQTLKYNMKVRAGRGFSLEELKAAGIPKKLASTIGIAVDHRRKNRSLESLQSNVQRLKTYKAKLVVFPRRARKVKAGDSTPEELANATQVQGSYLPIVREKPSVELVKVTDDMKAFKAYYKLRLERTNKRHYGARLKKAAEAEKEDKK | 207 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cca06g01080 | 207 | Coils | Coil | 192 | 207 | - | - | |
| Cca06g01080 | 207 | PANTHER | 60S RIBOSOMAL PROTEIN L13 | 1 | 207 | - | - | |
| Cca06g01080 | 207 | Gene3D | - | 167 | 207 | - | - | |
| Cca06g01080 | 207 | PANTHER | 60S RIBOSOMAL PROTEIN L13 | 1 | 207 | IPR001380 | GO:0003735|GO:0005840|GO:0006412 | |
| Cca06g01080 | 207 | Hamap | 50S ribosomal protein L13e [rpl13e]. | 45 | 128 | IPR001380 | GO:0003735|GO:0005840|GO:0006412 | |
| Cca06g01080 | 207 | ProSitePatterns | Ribosomal protein L13e signature. | 70 | 84 | IPR018256 | GO:0003735|GO:0005840|GO:0006412 | |
| Cca06g01080 | 207 | Pfam | Ribosomal protein L13e | 7 | 185 | IPR001380 | GO:0003735|GO:0005840|GO:0006412 |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Cca06g01080 | Cca-Chr6 | 24868893 | 24871157 | Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Cca06g01080 | 2 | 192 | Cytoplasmic Ribosomal Protein Gene Family | AT3G49010 | 87.958 | 6.49e-128 | 357 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cca06g01080 | K02873 | - | gmx:100805957 | 384.8 |