Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca06g01074 ATGGAGTCCAGTGAGCAAGAGAACGTGTCGCTTAGAGAGTTCCATGCTAATGGAACTCGCATTAGTGCATCAGAAGTTGAGGCCAAGCTTGATCAAGGAAATATTCAAGAGGCAGAAGATGCATTGCGAGAAGGGTTGTCACTTAATTTTGAGGAAGCAAGAGCTCTTCTTGGAAAGTTGGAGTATCAAAGAGGTAATGTAGAAGGTGCTCTTCGTGTGTTTGATGGAATTGATCTCCAAGCTGCCATACAGCGATTGCAACCTGCCTTTTCTGAAAAACAACCAGCCAAGAAAGGTCGCACTCGCATTGAATCACCCTCAATCTCTCAGCATGCGGCTAGTTTGGTGCTTGAAGCCATCTACTTAAAAGCCAAGTCTCTGCAAAAACTTAGGAAATTTACTGAGGCTGCTAGTGAATGTAAACGTATTCTTGATGCTGTTGAGAAGATATTTTATCTGGGGATTCCTGATATTCAAGTGGATAATAAGTTGCAAGAGATAGTCAGCCATGCAGTGGAGCTCCTTCCAGAGCTTTGGAAACAAGCTGGTTGCTATGATGAGGCAATCTCTGCTTATAGGCGTGCCCTTCTTAGTCAATGGAACCTTGATACTGATTGCTGTGCAAGAATTCAAAAGTCATTTGTTGTTTTTTTGCTATACAGTGGGGTGGAGGCAAGTCCACCTAGTTTAGCAGTTCAGATTGATGGATCATATGTGCCTAAAAATAATCTTGAAGAGGCTATTCTGCTATTGATGATTCTTTTGAAAAAGTTTTGTCTTGGTAAGATAAAATGGGATCCTTCAGTCATGGAACACCTGACTTTTGCACTGTCTATATGTAACCAAACTTCTGCTTTAGCAAAGCAATTTGAAGAATTGATGCCTGGAGTATACCACCGAATTGATTGTTGGAATTCTTTAGCCTTATGTCTTAGTGGAGCTGGAAAAAATGACAATGCTTTGAATCTACTAAGGAAGTCTTTGCACAAACATGAACAGCCAAATGACCTTACATCATTGTTGTTAGCTGCCAAGATATGCAGTGAGGATCCCCAGCTTGCTAATGAGGGAGTGAACTATGCTCAGAGGGCAATCAGTAATGCTCATGGCCCAAAAGAGCATTTAAAAGGTGTTGCTCTTCGGATGTTGGGACTTTGTTTGGGAAAGCAAGCTAAGGTTGCTTCCTCTGATTATGAGAGGTCTCACCTTCAGTCCAAAGCTCTGGAGTCACTGGAGGAGGCAATTAGATTGGAGCCAAACAATTCTGATCTGATTTTTGAATTGGCTGTTCAGTATGCAGAGCACCGAAATTTGCGTGCTGCTTTGCGCTCTGCAAGGCATTTCTTTAATGAAACGGGTGGTTCTGTATTGAAAGCTTGGATATTGCTTGTTCTAATTTTGTCTGCACAACAAAGATTTTCAGAAGCTGAAGTGGTGACAGATGCTGCTTTAGATCAGACTGCAAGATGGGAGCAGGGCCCACTGCTTAGGCTAAAAGCAAAGTTGAAGATCTCCCAATCACGACCCATGGATGCTATTGAAACTTATCGTTACCTTCTTGCATTGGTTCAAGCCCAGAAGAAATCCTTTGGGTCTCTCCAAATTAGTTCAAAAGTTGAGGATTATAAAGTAAATGAATTTGATATTTGGCATGGTCTGGCAAATTTATATGCTAGTCTTTCTCGTTGGAAGGATGCTGAAATATGTTTGCAAAAGGCCAGGGAGTTGAAGAAATATTCTGCAGCATTGGTGCACACCGAAGGTGTTTTGTTTGAAGGACGTGGACAAAATCGAGAAGCTCTTTGTGCTACTATTAATGCTGTACTACTTGAACCAAATCATGTTCCATGCAAGATTTTGATGGGTGCTTTGATTCAAAAAATGGGTTTAGATTCGGAGTATTTGACTGTTGCAAGAAGCTCACTGTCTGATGCACTTCGAATAGAGCACACAAATCGCAAGGCTTGGTATTGCTTGGGATTGCTTCACAAGCTTGATGGCCGAATAAATGATGCTGCTGACTGCTTCCAAGCAGCTTCCATGCTTGAAGAATCTGATCCCATCGAAAGTTTCAGCTCTATATCTTGA 2088 0.4176 MESSEQENVSLREFHANGTRISASEVEAKLDQGNIQEAEDALREGLSLNFEEARALLGKLEYQRGNVEGALRVFDGIDLQAAIQRLQPAFSEKQPAKKGRTRIESPSISQHAASLVLEAIYLKAKSLQKLRKFTEAASECKRILDAVEKIFYLGIPDIQVDNKLQEIVSHAVELLPELWKQAGCYDEAISAYRRALLSQWNLDTDCCARIQKSFVVFLLYSGVEASPPSLAVQIDGSYVPKNNLEEAILLLMILLKKFCLGKIKWDPSVMEHLTFALSICNQTSALAKQFEELMPGVYHRIDCWNSLALCLSGAGKNDNALNLLRKSLHKHEQPNDLTSLLLAAKICSEDPQLANEGVNYAQRAISNAHGPKEHLKGVALRMLGLCLGKQAKVASSDYERSHLQSKALESLEEAIRLEPNNSDLIFELAVQYAEHRNLRAALRSARHFFNETGGSVLKAWILLVLILSAQQRFSEAEVVTDAALDQTARWEQGPLLRLKAKLKISQSRPMDAIETYRYLLALVQAQKKSFGSLQISSKVEDYKVNEFDIWHGLANLYASLSRWKDAEICLQKARELKKYSAALVHTEGVLFEGRGQNREALCATINAVLLEPNHVPCKILMGALIQKMGLDSEYLTVARSSLSDALRIEHTNRKAWYCLGLLHKLDGRINDAADCFQAASMLEESDPIESFSSIS 695
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca06g01074 695 SUPERFAMILY TPR-like 28 338 IPR011990 GO:0005515
Cca06g01074 695 PANTHER PROTEIN NPG1 1 694 IPR043376 -
Cca06g01074 695 SMART tpr_5 547 580 IPR019734 GO:0005515
Cca06g01074 695 SMART tpr_5 377 421 IPR019734 GO:0005515
Cca06g01074 695 SMART tpr_5 117 150 IPR019734 GO:0005515
Cca06g01074 695 SMART tpr_5 301 334 IPR019734 GO:0005515
Cca06g01074 695 SMART tpr_5 653 686 IPR019734 GO:0005515
Cca06g01074 695 PANTHER CALMODULIN-BINDING PROTEIN 1 694 - -
Cca06g01074 695 Gene3D Tetratricopeptide repeat domain 15 200 IPR011990 GO:0005515
Cca06g01074 695 Gene3D Tetratricopeptide repeat domain 534 686 IPR011990 GO:0005515
Cca06g01074 695 Pfam Tetratricopeptide repeat 28 75 - -
Cca06g01074 695 SUPERFAMILY TPR-like 117 442 IPR011990 GO:0005515
Cca06g01074 695 SUPERFAMILY TPR-like 401 679 IPR011990 GO:0005515
Cca06g01074 695 Gene3D Tetratricopeptide repeat domain 228 533 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca06g01074 Cca-Chr6 24821883 24828638 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca06g01074 3 694 Calmodulin-binding Proteins AT2G43040 71.326 0.0 966
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca06g01074 K21843 - gmx:100814609 1189.48