Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca06g01069 ATGGCCGTGGCTCTGACGCCGGGGGCGATAACCACGATGTGCAGCGGCAATTGCACCGAGGAGTTGAAGCCGGTGCTGCAGGTTTTGGAGTTGAAGCTGGTGCAGTCGCAGCAAAACAGCACCACTGAGAGGTACCGTTTGGTTCTCTCCGACGGTTCCTTTTACCAGCAAGGGATGCTCGCCACGCAGAAGAACGACTTGGTTCATTCCCAAAGGTTGCAGAAAGGCTCCGTTGTTAGACTCACTCAGTTCATCTGCAACGTTGTCCAGAACCGCAAGATTATCATCATCGTCGACCTAGATGTTTTAATGGACAAATGTGAGGTGATTGGAGATCCTGTCGCTGCACCAAGAGGCACACCTGCAGAACCTGCCGCTGGTCAATCTGGACTCACCTCTGGGAATTCACAATCTTTAAATAGCAGTTCACATGCAGGTGGCATGGCTGCTAGGCCAAATGTTGCTGGGCCATCTCTGGATCATCCAAAAGTGAATTCTCCTGCCAGTAGTTATGTTAGTAATTCTTACCCTGGATCTAGTTATGCTAGTAATGCCCCTGCTACGCACCATAAAGTAGAGGCTGGAGAAAGTTTGTCCAGAACAGCATCATTCAGTGGGTCTTATGGTGATCAGAACACAAGTTTCCGCAATCCCCAATCTGAGGCTTCTAGGCCTTTGCAAAACTCTTATTCTCGTCCACCTCAGCCTATGTACCGGCAGCCATCTCCAATGTACACTAACAGAGGGCCAATTGGAAGAAGTGATGCTCCCCCCAGGATAATTCCGATAGCGGCATTGAATCCATACCAGAATATGTGGACAATTAAAGCCAGGGTAACAGCTAAGCAAGAAATCAGGCACTATAACAATGCCCGAGGTGAAGGCAAGGTGTTTTCTTTTGACCTTCTGGATTCTGACGGTGGAGAAATTCAAGCAACTTGCTTCAATACTGTGGCTGATCAGTTCTATAATTTAATTGAAGTTGGCAAGGTGTATCTAGTTTCCAGGGGAAGCATAAAAGCAGCTCAGAAGAATTTTAATCACCTTCGCAATGATCAAGTCCTAACCCTTGATTTGTCATCAACTATACAGCCATGCCCCGATGATGATAGCTCAATTCCCAAGCAGACATTTAATTTTCGTTCCATTAGTGAAATTGAGAGTGTGGAAAGCAACAGCATTGTGGATGTGATTGGTGTGGTGACTTCTATAGGTCCTACAGCTTCAATCATGAGAAAAAATGGCACTGAAACTCAGAAGAGAAGTCTCCAGTTGAAAGACATGTCTGGAAGAAGTGTTGAGCTGACTTTATGGGGAAATTTTTGCAATGTAGATGGGCAAAGGTTGCAAAATATCTGTGACTCCGGGGCATTTCCAGTTTTGGCCACAAAAGGTGTTAGAGTGAATGATTTCAATGGGAAGTCAGTTGGGACTATAAGCACTAGCCAGCTATTTGTAGAGCCTGATTTTCCTGAGGCTTACACACTGAAAAGATGGTTTGAAAATGAAGGGAAGAATGTCCCAACGCTCTCTATTTCCAGGGAAACATCTAGTTTTGGTAAAACTGATGTGCGGAAGACTATATCTCAAATTAAAGATGAGAAGTTAGGGACTTCCGAAAAGCCTGATTGGATATCTGTTTGTGCAAATGTTTCATTCATTAAGGTTGATAACTTCTGTTACCCCGGATGTCCTATCATGATAGGGGATAGGCAATGTAACAAAAAGGTGATTAATAATGGGGATGGGAAATGGCATTGCGATAGGTGTAATCAGTCTATTGAAGCTTGTGACTATAGGTACATACTGTCATTGCAGATACAGGATCACACTGGCCTAACATGGGTTACTGCTTTCCAGGAGAGTGGTGAGGAGATCATGGGTATTCCTGCAAAGGATTTGTATCATCTGAAGTATGAAGAGCAAGATGACGAAAAATTTGCTGAAATCATCCATAAGGTTCTCTTCACCAAGTATGTGTTCAAGTTAAAAATAAAAGAGGAGACATTCAGCGATGAACAACGTGTTAAATCAACTGTAGTAAAAGCAGATAAAGTAAACTTTGCGTCTGAATCTAATTTTCTTTTGGATTTGATTGATAAAATCAACACTGACAAATCACAATGTACCACCTTTCCTAACTCTCTAACCAATAATACTGGACTGGGGAGCGTTGAATCTGTGCAATTTAAGCCACCACCTTATAATCCTATAAAGAGCAGCACTGATACCAGTAGAGATTATGGCATGCCAGCAAATCAAGTGGGTCAGTATGGAAACCAATATAACAATTTTTCTTCAGCAGGTGCTCCTAGTTCATATTCTTCATCATGTACCAACTGTGGAGGCTCTGGCCATAGCTCTGTACTTTGCCCAAATGTTAGAAATGTACCTGGACAGTATGCTGGAGGAGGCTTTTCCAACAGGTCTTCTGCAGGATCtggtggtggtggtggtgctggtgAAtgctttaagtgccatcaacctggccactgggcaagagactgtcctggtttcagtgcAGCACCTCCAGCATATGGAGGCACTAATGTAATGCAAGGGAGATACGGGATCGCTCAAAATCAACATTTTGGAGGACATTGA 2604 0.422 MAVALTPGAITTMCSGNCTEELKPVLQVLELKLVQSQQNSTTERYRLVLSDGSFYQQGMLATQKNDLVHSQRLQKGSVVRLTQFICNVVQNRKIIIIVDLDVLMDKCEVIGDPVAAPRGTPAEPAAGQSGLTSGNSQSLNSSSHAGGMAARPNVAGPSLDHPKVNSPASSYVSNSYPGSSYASNAPATHHKVEAGESLSRTASFSGSYGDQNTSFRNPQSEASRPLQNSYSRPPQPMYRQPSPMYTNRGPIGRSDAPPRIIPIAALNPYQNMWTIKARVTAKQEIRHYNNARGEGKVFSFDLLDSDGGEIQATCFNTVADQFYNLIEVGKVYLVSRGSIKAAQKNFNHLRNDQVLTLDLSSTIQPCPDDDSSIPKQTFNFRSISEIESVESNSIVDVIGVVTSIGPTASIMRKNGTETQKRSLQLKDMSGRSVELTLWGNFCNVDGQRLQNICDSGAFPVLATKGVRVNDFNGKSVGTISTSQLFVEPDFPEAYTLKRWFENEGKNVPTLSISRETSSFGKTDVRKTISQIKDEKLGTSEKPDWISVCANVSFIKVDNFCYPGCPIMIGDRQCNKKVINNGDGKWHCDRCNQSIEACDYRYILSLQIQDHTGLTWVTAFQESGEEIMGIPAKDLYHLKYEEQDDEKFAEIIHKVLFTKYVFKLKIKEETFSDEQRVKSTVVKADKVNFASESNFLLDLIDKINTDKSQCTTFPNSLTNNTGLGSVESVQFKPPPYNPIKSSTDTSRDYGMPANQVGQYGNQYNNFSSAGAPSSYSSSCTNCGGSGHSSVLCPNVRNVPGQYAGGGFSNRSSAGSGGGGGAGECFKCHQPGHWARDCPGFSAAPPAYGGTNVMQGRYGIAQNQHFGGH 867
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca06g01069 867 SUPERFAMILY Nucleic acid-binding proteins 378 507 IPR012340 -
Cca06g01069 867 Gene3D - 511 702 IPR012340 -
Cca06g01069 867 MobiDBLite consensus disorder prediction 723 744 - -
Cca06g01069 867 MobiDBLite consensus disorder prediction 201 256 - -
Cca06g01069 867 SUPERFAMILY Nucleic acid-binding proteins 259 373 IPR012340 -
Cca06g01069 867 CDD RPA1N 8 103 IPR007199 GO:0003677|GO:0005634|GO:0006260
Cca06g01069 867 Gene3D - 371 510 IPR012340 -
Cca06g01069 867 PANTHER REPLICATION FACTOR A 1, RFA1 3 739 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Cca06g01069 867 CDD RPA1_DBD_B 394 501 - -
Cca06g01069 867 CDD RPA1_DBD_A 262 365 - -
Cca06g01069 867 TIGRFAM rpa1: replication factor-a protein 1 (rpa1) 227 701 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Cca06g01069 867 Gene3D - 773 842 - -
Cca06g01069 867 MobiDBLite consensus disorder prediction 126 147 - -
Cca06g01069 867 Pfam Replication factor-A protein 1, N-terminal domain 5 104 IPR007199 GO:0003677|GO:0005634|GO:0006260
Cca06g01069 867 Gene3D - 4 116 IPR012340 -
Cca06g01069 867 SMART c2hcfinal6 822 838 IPR001878 GO:0003676|GO:0008270
Cca06g01069 867 SMART c2hcfinal6 777 793 IPR001878 GO:0003676|GO:0008270
Cca06g01069 867 Pfam Replication protein A OB domain 383 486 IPR031657 -
Cca06g01069 867 SUPERFAMILY Nucleic acid-binding proteins 1 112 IPR012340 -
Cca06g01069 867 PANTHER REPLICATION PROTEIN A SUBUNIT 3 739 - -
Cca06g01069 867 CDD RPA1_DBD_C 528 701 IPR013955 -
Cca06g01069 867 SUPERFAMILY Retrovirus zinc finger-like domains 807 840 IPR036875 GO:0003676|GO:0008270
Cca06g01069 867 ProSiteProfiles Zinc finger CCHC-type profile. 823 837 IPR001878 GO:0003676|GO:0008270
Cca06g01069 867 SUPERFAMILY Nucleic acid-binding proteins 525 702 IPR012340 -
Cca06g01069 867 Pfam OB-fold nucleic acid binding domain 273 345 IPR004365 GO:0003676
Cca06g01069 867 Pfam Zinc knuckle 822 837 IPR001878 GO:0003676|GO:0008270
Cca06g01069 867 MobiDBLite consensus disorder prediction 201 235 - -
Cca06g01069 867 Pfam Replication factor-A C terminal domain 544 695 IPR013955 -
Cca06g01069 867 Gene3D - 259 369 IPR012340 -
Cca06g01069 867 MobiDBLite consensus disorder prediction 113 176 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca06g01069 Cca-Chr6 24777710 24781393 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca06g01069 1 815 Core DNA Replication Machinery Family AT5G45400 50.231 0.0 840
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca06g01069 K07466 - gmx:100778597 1266.91
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca06g01069 06 24777710 24781393 Cca06g01069 06 24777710 24781393 ECH