Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca06g01065 ATGGAGAGGTACAAGTTAATTAAGGAAGTTGGTGATGGGACGTTTGGGAGTGTCTGGAGAGCTATTAATAAGCAAACTGGTGAAGTTGTTGCTATTAAGAAAATGAAGAAGAAATATTACTCTTGGGAGGAGTGTGTAAATCTGAGAGAAGTCAAGTCATTACGAAAAATGAACCACCCAAATATTGTGAAGCTGAAGGAAGTTATTCGGGAAAGTGACATTTTGTACTTTGTTTTTGAGTACATGGAATGCAACCTATACCAACTTATGAAAGACAGGGAAAAACTGTTTTCTGAAGGTGAAATTAGAAATTGGTGTTTTCAAGTTTTCCAAGGTCTTGCTTACATGCACCAGCGTGGATACTTCCATCGTGACCTGAAGCCTGAAAACTTGTTGGTTACGAAGGATATAATCAAAATCGCTGATTTTGGCCTAGCCCGAGAAATCTGTTCACAACCACCCTACACTGAGTATGTCTCCACACGATGGTATCGTGCTCCTGAAGTGCTGCTTCAGTCTTATCTGTATACATCTAAAGTTGACATGTGGGCAATGGGTGCTATAATGGCTGAGCTTTTCTCTCTTCGTCCACTTTTCCCAGGTGTAAGTGAAGCAGATGAGATCTACAAAATATGTGGTGTAATAGGCAATCCAACCCTTGAATCTTGGGCTGATGGACTTAAACTTGCAAGGGATATTAACTACCAGTTTCCACAGCATGCCGGTGTGCATCTTTCTGCGTTGATCCCGTCTGCAAGTGATGATGCAATCAGCCTTATCACATCACTTTGCTCCTGGGATCCCTGCAAGAGGCCAACAGCTTCAGAGGCCCTTCAACATCCTTTCTTCCAGAGTTGCTTTTACATTCCTCCATCCCTTCGCAGCAGAGCTGTAGCGAGAACTCCTCCACCCGCTGGAACTAGAGGAGCACTGGATCAGCAAGGGGTTAAGAGATATTCCGGTGCTTTACCTAATTCAAAGCTCACCAATAATTTTTCCTCGCTGAAATTACATCCTCCTTTAGCTTCAGGTGTGCAACGGAAGCTGGATATGGTTCATCAGGATGCTATTAAGAACGAAAAGCCAATGAGGACTACTAAACCTAAATATCGACAGCCGGGAAAGGAGAGCCCAACTTATATGAACAAGGGGAGGTCTGGACGTGGGGTTTCTGAAACAGCTGAGAAGTTGGGGAATTTGACTGTTGGCAGTCGAAGACAATCAATGGGGCGTCCTCCAGCAATGAAGGCTGGAGTGAATTGGATTTCTGAATTTGGGCCAGCACAACAGATTCCGACTGGAAGAACTTTCACAAGAAAAGTTGCCGGATGA 1332 0.4392 MERYKLIKEVGDGTFGSVWRAINKQTGEVVAIKKMKKKYYSWEECVNLREVKSLRKMNHPNIVKLKEVIRESDILYFVFEYMECNLYQLMKDREKLFSEGEIRNWCFQVFQGLAYMHQRGYFHRDLKPENLLVTKDIIKIADFGLAREICSQPPYTEYVSTRWYRAPEVLLQSYLYTSKVDMWAMGAIMAELFSLRPLFPGVSEADEIYKICGVIGNPTLESWADGLKLARDINYQFPQHAGVHLSALIPSASDDAISLITSLCSWDPCKRPTASEALQHPFFQSCFYIPPSLRSRAVARTPPPAGTRGALDQQGVKRYSGALPNSKLTNNFSSLKLHPPLASGVQRKLDMVHQDAIKNEKPMRTTKPKYRQPGKESPTYMNKGRSGRGVSETAEKLGNLTVGSRRQSMGRPPAMKAGVNWISEFGPAQQIPTGRTFTRKVAG 443
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca06g01065 443 CDD STKc_MAK_like 4 283 - -
Cca06g01065 443 ProSitePatterns Serine/Threonine protein kinases active-site signature. 121 133 IPR008271 GO:0004672|GO:0006468
Cca06g01065 443 ProSitePatterns Protein kinases ATP-binding region signature. 10 34 IPR017441 GO:0005524
Cca06g01065 443 Gene3D Transferase(Phosphotransferase) domain 1 84 288 - -
Cca06g01065 443 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE 1 394 - -
Cca06g01065 443 Gene3D Phosphorylase Kinase; domain 1 1 83 - -
Cca06g01065 443 MobiDBLite consensus disorder prediction 365 391 - -
Cca06g01065 443 SMART serkin_6 4 283 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca06g01065 443 PANTHER CYCLIN-DEPENDENT KINASE F-4-LIKE ISOFORM X1 1 394 - -
Cca06g01065 443 SUPERFAMILY Protein kinase-like (PK-like) 1 287 IPR011009 -
Cca06g01065 443 ProSiteProfiles Protein kinase domain profile. 4 283 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca06g01065 443 Pfam Protein kinase domain 4 283 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca06g01065 Cca-Chr6 24696860 24701059 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca06g01065 1 290 Core Cell Cycle Gene Families AT3G48750 37.919 6.81e-67 214
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_RCK Cca06g01065 Pkinase 1.4e-74 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca06g01065 K08829 - gmx:100810150 848.966
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca06g01065 06 24696860 24701059 Cca06g01065 06 24696860 24701059 ECH